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SaritaPoonia / unCTC

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Error: [matrixStats (>= 1.2.0)] useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. See also ?matrixStats::matrixStats.options #3

Open shichaoli1985 opened 1 week ago

shichaoli1985 commented 1 week ago

THE step "## Calculate pathway enrichment score" in sample data:

Call PathwayEnrichmentScore

Pathway_score = unCTC::PathwayEnrichmentScore(data_list =dataList, data_id = dataId, Genesets = genesets, min.size=10, max.size = 500, min_Sample = 5, min_Gene = 1500)

Error: [matrixStats (>= 1.2.0)] useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. See also ?matrixStats::matrixStats.options

shichaoli1985 commented 1 week ago

would you updata your unCTC package?

shichaoli1985 commented 1 week ago

I choose to install.packages("matrixStats", version = "1.1.0") ,hope it work

pooniasarita commented 1 week ago

Hi shichaoli,

Thanks for the suggestion. I will look into the error and will update soon.

Thanks again

shichaoli1985 commented 1 week ago

unCTC is a very creative work, Thank you for your reply