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Saskia-Oosterbroek / decona

fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
MIT License
41 stars 12 forks source link

Installation #45

Open Hanjiewu opened 1 year ago

Hanjiewu commented 1 year ago

I am bit confused about the installation process. I downloaded the source code (tar.gz) of decona v1.3.1 and unzipped it. Next, I went to the install directory of the unzipped decona-1.3.1/install and run install.sh and the error message showed up: Building CD-HIT... make: *** No targets specified and no makefile found. Stop. Can you walk me through the installation, thank you.

ls47 commented 1 year ago

there is an additional install.sh: https://github.com/Saskia-Oosterbroek/decona/tree/master/install replace the install.sh with this file and start installation.

JosKielgast commented 1 year ago

Hi Hanjiewu, My terminal crashes when I run the new install that you link to above. I work in Ubuntu 20.04.5 LTS on windows. Any clues to help me out?

ls47 commented 1 year ago

Hi JosKielgast:

try the following: git clone --recurse-submodules https://github.com/Saskia-Oosterbroek/decona.git

If that is not working maybe it's because of WSL. Are you using WSL 2?

JosKielgast commented 1 year ago

Oh my goodness Saskia! Wow it worked like a charm ;-) Put this in the installation note on github. It can save hours and hours of fiddling and fooling around.

Will look forward to applying your work! Thank you so much!

Best, Jos

On Tue, 11 Oct 2022 at 11:01, ls47 @.***> wrote:

Hi JosKielgast:

try the following: git clone --recurse-submodules https://github.com/Saskia-Oosterbroek/decona.git

If that is not working maybe it's because of WSL. Are you using WSL 2?

— Reply to this email directly, view it on GitHub https://github.com/Saskia-Oosterbroek/decona/issues/45#issuecomment-1274351984, or unsubscribe https://github.com/notifications/unsubscribe-auth/A3RF6NRGY5WCPQHWGP4NKA3WCUUE5ANCNFSM574YXT3A . You are receiving this because you commented.Message ID: @.***>

aperreault commented 11 months ago

Hi there! I'm working on a Mac and having issues with installation. I downloaded the source code (tar.gz) of decona v1.3.1 and unzipped it. I went to the install directory of the unzipped decona-1.3.1/install and ran install.sh. I got the following error:

Building CD-HIT...
make: *** No targets specified and no makefile found.  Stop.

Any help would be appreciated!