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ScalableCytometryImageProcessing / SCIP

Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
https://scalable-cytometry-image-processing.readthedocs.io/en/latest/
GNU General Public License v3.0
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Perform background subtraction #11

Closed MaximLippeveld closed 3 years ago

MaximLippeveld commented 3 years ago

With background subtraction we try to remove the influence of background noise from the signal of interest. This blog post gives a nice introduction to the topic: https://biapol.github.io/blog/ryan_savill/03_background_subtraction/

sanderthierens commented 3 years ago

Tophat can improve using small sizes and an addition of the filter instead of substraction

sanderthierens commented 3 years ago

Tried a combination of DOG smoothing and tophat filtering, this doesn't improve much

MaximLippeveld commented 3 years ago

Could be a good substitute for NLM denoising (see #18)