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ScalableCytometryImageProcessing / SCIP

Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
https://scalable-cytometry-image-processing.readthedocs.io/en/latest/
GNU General Public License v3.0
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Move UMAP to separate module #25

Closed MaximLippeveld closed 2 years ago

MaximLippeveld commented 3 years ago

UMAP (and other dimensionality reduction methods) should be added to a separate analysis module. UMAP results should still be added to a report. Components should be concatenated to other features so that dimensionality reductions can be exported alongside features.

MaximLippeveld commented 2 years ago

There will likely be no UMAP in SCIP. We will focus on distributed algorithms in Dask-ML.