Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
Currently, reports and data export is done by calling intermediate computes. This interrupts the Dask task graph, preventing further optimization. It might be better to gather delayed objects and output later.
Currently, reports and data export is done by calling intermediate computes. This interrupts the Dask task graph, preventing further optimization. It might be better to gather delayed objects and output later.