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ScalableCytometryImageProcessing / SCIP

Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
https://scalable-cytometry-image-processing.readthedocs.io/en/latest/
GNU General Public License v3.0
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Compute CP MeasureImageQuality features to filter out abberant images prior to full computation #34

Open MaximLippeveld opened 3 years ago

MaximLippeveld commented 3 years ago

Module: https://github.com/CellProfiler/CellProfiler/blob/master/cellprofiler/modules/measureimagequality.py

Implements focus scoring, local focus scoring, correlation and power log log slope. Discussed in this paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6112602/pdf/nihms947726.pdf