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ScalableCytometryImageProcessing / SCIP

Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
https://scalable-cytometry-image-processing.readthedocs.io/en/latest/
GNU General Public License v3.0
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Export to AnnData #37

Closed MaximLippeveld closed 3 years ago

MaximLippeveld commented 3 years ago

https://anndata.readthedocs.io/en/latest/index.html

MaximLippeveld commented 3 years ago

Pandas Dataframes can easily be converted to AnnData objects.