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ScalableCytometryImageProcessing / SCIP

Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
https://scalable-cytometry-image-processing.readthedocs.io/en/latest/
GNU General Public License v3.0
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Alternative segmentation for noisy channels #4

Closed MaximLippeveld closed 3 years ago

MaximLippeveld commented 3 years ago

Brightfield segmentation currently does not work because it is much more noisy than other channels. We need to allow the user to indicate which channels are expected to be very noisy.

sanderthierens commented 3 years ago

Added a 'noisy_channel' parameter in the 'denoising' and 'create_masks_on_bag' functions