ScheltemaLab / ChimeraX_XMAS_bundle

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Where to find the statistical info? #1

Closed heejongkim closed 1 year ago

heejongkim commented 2 years ago

Hello,

Thank you so much for developing such fantastic addon for chimeraX.

I'm wondering where I can find those values plotted in distance plot. I see, from the log, unique peptide pairs and unique peptide pairs with pseudobonds. I believe those corresponding to unique unique peptide sequence pairs (not necessarily residue pairs) and with pseudobonds means XLs that are mapped to the model.

I wonder what would be the best way to get numbers of unique pairs with distance cutoff so I can tell how many agree or disagree quickly and accurately.

Thank you so much.

rscheltema commented 1 year ago

Hi,

Appologies for the ultra-late reply; we didn't notice this (?). If this is still current. A .TSV file is generated in the same folder as the crosslinks file you load, where all the distances are displayed.

Cheers, Richard