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Specifications for evidence file #3

Closed michabirklbauer closed 1 year ago

michabirklbauer commented 2 years ago

Greetings!

In your manual you are writing "XMAS currently supports evidence files generated with the search engines XlinkX for Proteome Discoverer (PD), Xi, and pLink, in csv, tsv, txt, and xlsx format. Additionally, mzIdentML files (mzid format) are supported."

Are there any specifications for how an evidence file has to look like? E.g. which columns do have to be there etc. I am asking this in regards to using XMAS also for other XL search engines

andzajan commented 1 year ago

Hi @michabirklbauer, sorry for delayed response. Preferred input would be mzIdentML, but you can also see what column names are required from Table 1 from user manual Chapter 7.

michabirklbauer commented 1 year ago

Thanks a lot for the reply, I will try that out!