Mapping from .mzIdentML coming up empty

ScheltemaLab / ChimeraX_XMAS_bundle

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Mapping from .mzIdentML coming up empty #4

Open grandrea opened 1 year ago

grandrea commented 1 year ago

Hello,

I have my identifications in .mzIdentML format from a sulfo-SDA search on a single protein. Clicking on "map crosslinks" results in

Unique peptide pairs: 0 out of 0
Unique peptide pairs with pseudobonds: 0
Mapping information is stored in C:/Users/andrea.graziadei/Downloads/20230508_NSUN_SDA_test2_1.tsv
Please select pseudobonds

I am happy to provide the files by email if needed. Thanks for the help!

andzajan commented 1 year ago

Hi, can you please send this mzidentML file to a.jankevics "at" uu.nl? What software did generate mzidentML output?

Thank you, Andris

grandrea commented 1 year ago

hello,

the software is xiSEARCH/xiFDR. I will send the files, thank you!

andzajan commented 1 year ago

Hi @grandrea , we have released update of XMAS version 1.1.3. Can you please test if mzid parsing issue you had been resolved?