missing donor samples - Githubissues

SchlossLab / Lesniak_Severity_mBio_2022

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missing donor samples #76

Closed NLesniak closed 3 years ago

NLesniak commented 4 years ago

need to edit files.file to include:

inocula for 884 - not included due to typo inpa-control-DA0084_S314_L001_R1_001.fastq
include donors c diff was isolated from
- look into availability of sequencing data to include cdiff isolate donors
- 395, 458, 299

rerun mothur

NLesniak commented 3 years ago

Resequence donor from ERIN samples Located:

donors DA00430 DA00431 DA00578 DA00581 DA00810 DA00884 DA00953 DA01134 DA01324 DA10027 DA10034 DA10093 DA10148 and
Cdiff isolate donors DA00299 DA00395 DA00458

Missing samples:

DA00369 None in tube
DA01245 Did not find
DA10082 Did not Find

NLesniak commented 3 years ago

Located donors resequenced - samples 369, 430, 431, 578, 581, 810, 884, 953, 1134, 1245, 1324, 10027, 10034, 10093, and 10148 Do not necessarily need the samples C. diff was isolated from (395, 458, 299)

Rerun mothur including these donors and no longer need 454 seqeuncing