Align the rrnDB fasta file to SILVA SEED reference

SchlossLab / Schloss_rrnAnalysis_mSphere_2021

Code Club project analyzing utility of ASVs

MIT License

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Closed pschloss closed 4 years ago

pschloss commented 4 years ago

We'll use mothur's align.seqs function to align the sequences in the rrnDB fasta file to the silva reference alignment.

pschloss commented 4 years ago

code/mothur/mothur '#align.seqs(fasta=data/raw/rrnDB-5.6_16S_rRNA.fasta,
reference=data/references/silva_seed/silva.seed_v138.align, flip=T)'