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mikropml-snakemake-workflow
Snakemake template for building reusable and scalable machine learning pipelines with mikropml
MIT License
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Fixed a typo
#43
acollens
closed
1 year ago
0
Add community docs
#42
kelly-sovacool
closed
1 year ago
0
Improve report & ROC / PRC plots
#41
kelly-sovacool
closed
1 year ago
0
Use Paramspace to automate the file naming scheme based on wildcards
#40
kelly-sovacool
opened
1 year ago
1
Create otu-micro dataset for blazin' fast tests 🏎️
#39
kelly-sovacool
closed
1 year ago
0
Create demo of running the workflow on a larger github-actions runner
#38
kelly-sovacool
closed
1 year ago
0
Read & write compressed csv files
#37
kelly-sovacool
opened
1 year ago
1
Use Paramspace to automate file naming scheme based on wildcards
#36
kelly-sovacool
opened
1 year ago
2
Demo how to use GitHub Actions to run the workflow on a cloud platform
#35
kelly-sovacool
opened
1 year ago
0
Plot ROC & PRC curves
#34
kelly-sovacool
closed
1 year ago
0
Automatically update DAG & rulegraph in PRs
#33
kelly-sovacool
closed
1 year ago
0
Use schtools::get_wildcards_tbl()
#32
kelly-sovacool
closed
1 year ago
0
Add wildcards as columns in results data frames
#31
kelly-sovacool
closed
1 year ago
1
Add wildcards as columns in train_ml results dataframes
#30
kelly-sovacool
closed
1 year ago
0
Support Snakemake's report feature
#29
kelly-sovacool
closed
1 year ago
0
Create Docker/Singularity container
#28
kelly-sovacool
closed
1 year ago
0
Create integration test
#27
kelly-sovacool
opened
1 year ago
0
Fix failing unit tests
#26
kelly-sovacool
opened
1 year ago
1
Port R Markdown docs to Quarto
#25
kelly-sovacool
opened
2 years ago
0
Plot ROC curves
#24
kelly-sovacool
closed
1 year ago
1
Fix GitHub Actions workflows
#23
kelly-sovacool
closed
2 years ago
0
Allow custom hyperparameters and a feature importance toggle in config
#22
kelly-sovacool
closed
2 years ago
0
Use parRF for randomForest
#20
kelly-sovacool
closed
2 years ago
0
Use `parRF` instead of `rf`
#19
kelly-sovacool
closed
2 years ago
2
Add rule to compare models
#18
courtneyarmour
opened
2 years ago
1
Refactor the Snakemake workflow to follow the new standardized usage guidelines
#17
kelly-sovacool
closed
2 years ago
2
change default config to config.yml?
#16
courtneyarmour
closed
2 years ago
0
Recommend using mamba
#15
kelly-sovacool
closed
2 years ago
0
Use Snakemake's Reports feature
#14
kelly-sovacool
closed
1 year ago
0
Comply with the Snakemake standardized usage rules
#13
kelly-sovacool
closed
2 years ago
0
Specify col_types for benchmarks CSV file
#12
kelly-sovacool
closed
3 years ago
0
plot_benchmarks memory column is non-numeric
#11
sajanraju
closed
3 years ago
2
Support SGE
#10
BTopcuoglu
opened
3 years ago
4
Error in job plot_benchmarks while creating output file figures/benchmarks.png
#9
ykefella
closed
3 years ago
1
Error in job combine_results while creating output file results/performance_results.csv
#8
ykefella
closed
3 years ago
4
Add functionality to plot hyperparameter performance
#7
zenalapp
closed
3 years ago
0
Make changing hyperparameters easier
#6
zenalapp
closed
2 years ago
1
Change hardcoded outcome_colname to name from config file resolves #4
#5
zenalapp
closed
3 years ago
0
Remove hardcoded outcome_colname in preprocessing script
#4
zenalapp
closed
3 years ago
0
rename output figures resolves #2
#3
zenalapp
closed
3 years ago
0
Rename example output figures to benchmark-example.png and performance-example.png
#2
zenalapp
closed
3 years ago
3
Show plot_hp_performance()
#1
kelly-sovacool
closed
3 years ago
0