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SchlossLab
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schtools
Schloss Lab Tools for Reproducible Microbiome Research 💩
http://www.schlosslab.org/schtools
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#52
cafferychen777
opened
1 year ago
0
Fix roxygen package doc syntax
#51
kelly-sovacool
closed
1 year ago
0
Refactor read_dist()
#50
kelly-sovacool
opened
1 year ago
0
Update citation info
#49
kelly-sovacool
closed
1 year ago
0
Fix get_wildcards_tbl() - don't overwrite the seed
#48
kelly-sovacool
closed
1 year ago
0
Release 0.4.0
#47
kelly-sovacool
closed
1 year ago
0
Convert snakemake wildcards list to a tibble
#46
kelly-sovacool
closed
1 year ago
0
Set message to FALSE in knitr opts
#45
kelly-sovacool
closed
1 year ago
0
Fixes for ggplot2 v3.4.0 & tidyselect v1.2.0
#44
kelly-sovacool
closed
2 years ago
0
Make taxon_level a char instead of a data var for pool_taxon_counts()
#43
kelly-sovacool
closed
2 years ago
0
Fix tests in advance of next ggplot2 release
#42
kelly-sovacool
closed
2 years ago
0
Issues with next version of ggplot2
#41
thomasp85
closed
2 years ago
0
Add Sarah's theme
#40
kelly-sovacool
closed
2 years ago
0
Create custom ggplot2 theme
#39
kelly-sovacool
closed
2 years ago
0
Create function to calculate relative abundances
#38
kelly-sovacool
closed
2 years ago
0
Create function to pool shared counts at any taxonomic level
#37
kelly-sovacool
closed
2 years ago
0
Create log_snakemake() function
#35
kelly-sovacool
closed
2 years ago
1
Prepare to release v0.2.1
#34
kelly-sovacool
closed
2 years ago
0
Improve docs
#33
kelly-sovacool
closed
2 years ago
0
Add label_html column to taxonomy dataframe for use with ggtext
#32
kelly-sovacool
closed
2 years ago
0
Create schtools logo
#31
kelly-sovacool
closed
2 years ago
0
Refactor read_tax()
#30
kelly-sovacool
closed
2 years ago
0
Prepare release v0.1.0 for CRAN
#29
kelly-sovacool
closed
2 years ago
0
Write is_nondesc() to check whether variables are in non-descending order
#28
kelly-sovacool
closed
2 years ago
1
Simplify the unit test for set_knitr_opts()
#27
kelly-sovacool
closed
3 years ago
0
Check whether two numeric vectors are close_enough()
#26
kelly-sovacool
closed
3 years ago
0
Rename the package to 'schtools'
#25
kelly-sovacool
closed
3 years ago
0
Round R Markdown numbers to 1 decimal place when >= 1
#24
kelly-sovacool
closed
3 years ago
1
Pick a new name for the package
#23
kelly-sovacool
closed
3 years ago
3
Parse taxonomy file to dataframe
#22
NLesniak
closed
4 years ago
3
Pat's R Markdown helper functions
#21
kelly-sovacool
closed
4 years ago
1
Pat's function to insert lists in R Markdown with Oxford commas
#20
kelly-sovacool
closed
4 years ago
0
Pat's inline_hook() for R Markdown papers
#19
kelly-sovacool
closed
4 years ago
0
Function to set Pat's default knitr options
#18
kelly-sovacool
closed
4 years ago
0
Read sequencing error files for easy insertion in R Markdown
#17
kelly-sovacool
opened
4 years ago
0
Parse summary.single files for diversity metrics
#16
kelly-sovacool
opened
4 years ago
0
Create data frame for ML from metadata & shared files
#15
kelly-sovacool
opened
4 years ago
3
Parse taxonomy files to a tidy format
#14
kelly-sovacool
closed
4 years ago
0
Refactor read_dist()
#13
kelly-sovacool
opened
4 years ago
4
Calculate the fraction of reads that mapped during closed-reference clustering
#12
kelly-sovacool
opened
4 years ago
0
Functions to select sequence subsamples based on different weighting methods
#11
kelly-sovacool
opened
4 years ago
0
Revamp the package
#10
kelly-sovacool
closed
4 years ago
0
Downloading Error
#9
emarques1
closed
4 years ago
0
fixed problem with transposed upper triangle in read.dist
#8
nbaxter13
closed
4 years ago
0
Add plot for LDA score
#7
kdiverson
closed
4 years ago
1
Look into unit testing
#6
kdiverson
closed
4 years ago
0
Read In Share and Design files
#5
ahanna
closed
4 years ago
0
check *.dist functions
#4
kdiverson
closed
4 years ago
0
Add function to create stacked barchart of abundance
#3
kdiverson
closed
11 years ago
1
Add function to plot rarefaction curves
#2
kdiverson
closed
11 years ago
1
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