SchmollerLab / Cell_ACDC

A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
BSD 3-Clause "New" or "Revised" License
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Weird error. Segmentation and Tracking all off #26

Open MasaruShimasawa opened 2 years ago

MasaruShimasawa commented 2 years ago

Describe the bug When we start the GUI and go into segmentation and tracker mode, we cannot change frames. When we try to create a new cell, and then move frames, we get this error:

スクリーンショット 2022-04-06 11 03 17

Also, in viewer mode, the cell tracking is off for some reason.

Log: 2022-04-06_10-52-30_gui_stdout.log

To Reproduce Steps to reproduce the behavior:

  1. get files from this link: https://drive.google.com/file/d/1-666NEtmjIXLBn5H_ZdbNeeSEzM45Lc8/view?usp=sharing
  2. Open GUI module
  3. load files
  4. Try moving frames
  5. See error

Expected behavior For everything to work normally.

Screenshots If applicable, add screenshots to help explain your problem.

Desktop (please complete the following information):

Additional context Add any other context about the problem here.

ElpadoCan commented 2 years ago

Hi @MasaruShimasawa, this was fixed in a recent release. Please activate the environment with conda activate acdc and update to the latest version with pip install --upgrade cellacdc

Let me know if it works, thanks!

PS: Tracking is disabled in Viewer mode because the Viewer mode is only for visualizing the data as is, there is no possibility to modify or interact with the data in this mode.