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SchmollerLab / Cell_ACDC

A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
BSD 3-Clause "New" or "Revised" License
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Custom parsing function for re-structuring TIFF files #399

Open ElpadoCan opened 1 year ago

ElpadoCan commented 1 year ago

Description:

In the "Re-structure files" module add a Custom option to the list of ways the user has the files structured.

When selected, Cell-ACDC should ask to choose a Python file that contains the function that parses the filenames.

This function must return four variables: pos_number, channel_name, frame_number, z_slice. However, any of these (or all), can be None, meaning that they are already in the file or not present at all. For example, if frame_number == None, and the file is a 3D file with dimensions (t, y, x) the time dimension is already in the file.

When any of the variables is None, Cell-ACDC must ask whether they are present in the file. If they are, it must ask the order of dimensions to extract them correctly.

ElpadoCan commented 1 year ago

This should solve #396

github-actions[bot] commented 7 months ago

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