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SchulzLab / Aeron

Alignment, quantification and fusion prediction from long RNA reads
MIT License
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loose fusions rule error #25

Open f0t1h opened 3 years ago

f0t1h commented 3 years ago

I am getting the following error when running fusion snakemake.

rule loose_fusions:                                                                                                                       
    input: fusiontmp/exactparsematrix_sim21_22_Homo-sapiens-GRCh38-cdna-all_GRCh38-97.txt                                                 
    output: fusiontmp/loose_gene_fusion_sim21_22_Homo-sapiens-GRCh38-cdna-all_GRCh38-97.txt                                               
    jobid: 12                                                                                                                             
    wildcards: reads=sim21_22, transcripts=Homo-sapiens-GRCh38-cdna-all, graph=GRCh38-97                                                  

AeronScripts/pairmatrix_get_genes.py < fusiontmp/exactparsematrix_sim21_22_Homo-sapiens-GRCh38-cdna-all_GRCh38-97.txt > fusiontmp/loose_getxt
Traceback (most recent call last):
  File "AeronScripts/pairmatrix_get_genes.py", line 13, in <module>
    lgene = generegex.search(parts[0]).group(1)
AttributeError: 'NoneType' object has no attribute 'group'
MikaQiao commented 2 years ago

I ran into the same error, does anyone have a solution?