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SchulzLab / EpigenomeAnalysisTutorial-2020

This website contains material for an epigenome analysis tutorial that covers ATAC-seq analysis and integration with TF motifs and gene expression
MIT License
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Illegal instruction (core dumped) #4

Closed lzj1769 closed 4 years ago

lzj1769 commented 4 years ago

error from step 2.4 in practical 1:

rgt-motifanalysis matching --organism=hg38 --output-location=./results/session1/hint_chr21/motifmatching --input-files ./results/session1/hint_chr21/footprints/hESC.bed ./results/session1/hint_chr21/footprints/Cardiac.bed

output location: ./results/session1/hint_chr21/motifmatching

genome: hg38 pseudocounts: 1.0 fpr threshold: 0.0001

loading input files..

hESC, 2517 regions Cardiac, 7986 regions

loading motif databases..

jaspar_vertebrates

Illegal instruction (core dumped)

lzj1769 commented 4 years ago

It seems this is a MOODS-related issue, which has been reported in rgt-motifanalysis and MOODS: https://github.com/CostaLab/reg-gen/issues/57 https://github.com/jhkorhonen/MOODS/issues/19 https://github.com/bioconda/bioconda-recipes/issues/9079

lzj1769 commented 4 years ago

here is solution:

pip uninstall MOODS-python
conda install -c bioconda moods

@skarunan can you implement it and update the docker?

skarunan commented 4 years ago

This solution works in my docker container