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SchulzLab / EpigenomeAnalysisTutorial-2020

This website contains material for an epigenome analysis tutorial that covers ATAC-seq analysis and integration with TF motifs and gene expression
MIT License
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Cannot find ~/container-data for windows system #7

Closed lzj1769 closed 4 years ago

lzj1769 commented 4 years ago

@skarunan

I asked my colleague to test the tutorial using windows 10 pro, after running docker run -it -P --name epigenomics -v ~/container-data:/data sivarajank/epigenomics_tutorial:latest he couldn't find ~/container-data folder.

skarunan commented 4 years ago

Well, it should be in their home directory!

I think, in windows10 it corresponds to C:\Users\Username or C:\home\username

skarunan commented 4 years ago

@lzj1769 I found something on the internet for a similar issue. Could you ask your colleague to try the accepted answer from here?

https://superuser.com/questions/1051520/docker-windows-container-how-to-mount-a-host-folder-as-data-volume-on-windows

lzj1769 commented 4 years ago

sure, will do that.

it will be better if we can make this clear to these windows users in installation docs.

skarunan commented 4 years ago

@lzj1769 If the solution works, pls let me know. And, I can add an alternative command for windows user in the readthedocs

skarunan commented 4 years ago

added windows command