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SchwartzLab / mazter_mine

An R program to calculate cleavage efficiency in MAZTER-seq derived data
https://github.com/SchwartzLab/mazter_mine/tree/master/tutorial
Apache License 2.0
5 stars 4 forks source link

request for yeast SK1 genome and gtf #8

Closed xieyy46 closed 2 months ago

xieyy46 commented 2 years ago

Hi Mazter-seq Team！I can not find any information about yeast SK1 genome and gtf used in your paper, can you share the link to me? Thank you so much! image

AngelCampos commented 2 years ago

Hello xieyy16.

We used a bed6 gene annotation for yeast Sk1. You can download both the genome and gene annotation from here: https://zenodo.org/record/6537299

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On Sat, May 7, 2022 at 11:40 PM xieyy46 @.***> wrote:

Hi Mazter-seq Team！I can not find any information about yeast SK1 genome and gtf used in your paper, can you share the link to me? Thank youn so much! [image: image] https://user-images.githubusercontent.com/76148123/167282082-6e8d38ed-8068-4810-a132-8a4a50679c11.png

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