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SciCrunch / NIF-Ontology

NIF Standard Ontologies (NIFSTD)
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import from interlex #110

Open tgbugs opened 7 years ago

tgbugs commented 7 years ago

There are a number of classes that only exist in neurolex that need to be backported into the ontology. A partial list is here.

[ 'NIFGA:nlx_110',
 'NIFGA:nlx_143549',
 'NIFGA:nlx_143553',
 'NIFGA:nlx_143557',
 'NIFGA:nlx_143558',
 'NIFGA:nlx_143559',
 'NIFGA:nlx_143582',
 'NIFGA:nlx_144002',
 'NIFGA:nlx_144064',
 'NIFGA:nlx_144108',
 'NIFGA:nlx_144263',
 'NIFGA:nlx_144462',
 'NIFGA:nlx_144463',
 'NIFGA:nlx_144479',
 'NIFGA:nlx_147892',
 'NIFGA:nlx_149357',
 'NIFGA:nlx_151878',
 'NIFGA:nlx_151902',
 'NIFGA:nlx_152609',
 'NIFGA:nlx_152610',
 'NIFGA:nlx_152619',
 'NIFGA:nlx_152661',
 'NIFGA:nlx_153848',
 'NIFGA:nlx_153910',
 'NIFGA:nlx_18606',
 'NIFGA:nlx_20558',
 'NIFGA:nlx_23647',
 'NIFGA:nlx_27388',
 'NIFGA:nlx_28532',
 'NIFGA:nlx_32548',
 'NIFGA:nlx_379',
 'NIFGA:nlx_39987',
 'NIFGA:nlx_412',
 'NIFGA:nlx_49940',
 'NIFGA:nlx_53',
 'NIFGA:nlx_54921',
 'NIFGA:nlx_57107',
 'NIFGA:nlx_58',
 'NIFGA:nlx_60319',
 'NIFGA:nlx_60880',
 'NIFGA:nlx_69745',
 'NIFGA:nlx_77783',
 'NIFGA:nlx_79282',
 'NIFGA:nlx_80623',
 'NIFGA:nlx_81',
 'NIFGA:nlx_89',
 'NIFGA:nlx_93650',
 'NIFGA:nlx_93816',
 'NIFGA:nlx_94939',
 'NIFGA:nlx_98',
 'NIFGA:nlx_98733',
 'NIFGA:nlx_anat_090820',
 'NIFGA:nlx_anat_090821',
 'NIFGA:nlx_anat_1008003',
 'NIFGA:nlx_anat_1008004',
 'NIFGA:nlx_anat_1008005',
 'NIFGA:nlx_anat_1008006']
tgbugs commented 6 years ago

Laminar structures need to be merged and modelled as well.

part 1

I think I've asked for this before, but I have added a lot of cell layers to Neurolex and I want to be able to generate a list of laminar structures (defined as a part of brain having cell layers). Stephen said this was hard to do in Neurolex but it should be possible in OWL, correct? Maryann Martone, Ph. D.

part 2

Now that we have "Cell layer" as a CUMBO term and I've classified all layers (or most layers) as "Cell layers", can we generate a "Layer parts of" defined class to display on a brain region that can be displayed separately from the 'part of", e.g., remove the olfactory cortex layers from the "part of" list and have them displayed under the "Layers of Olfactory cortex", which is generated automatically from "is a Cell layer and is part of Olfactory cortex". I think that would be much more satisfactory than our current method and it will show the power of the model for neuroanatomy, instead of the infinite cross products that need to be generated otherwise. Maryann

tgbugs commented 6 years ago

Import the partonomy that was created for the brain regions.