Closed orzechoj closed 6 years ago
The jobs run locally (i.e. on the login node) are get_software_versions and multiqc. These fail when I run them on bianca, where I can only get 7Gb memory on the login node. Currently I use the pipeline with base config file like this:
$multiqc { memory = { check_max( 2.GB * task.attempt, 'memory' ) } executor = 'local' errorStrategy = { task.exitStatus in [143,137] ? 'retry' : 'ignore' } } $get_software_versions { memory = { check_max( 2.GB * task.attempt, 'memory' ) } executor = 'local' errorStrategy = 'ignore' }
The jobs run locally (i.e. on the login node) are get_software_versions and multiqc. These fail when I run them on bianca, where I can only get 7Gb memory on the login node. Currently I use the pipeline with base config file like this: