Fix some bugs on munin - Githubissues

SciLifeLab / Sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

https://nf-co.re/sarek

MIT License

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Fix some bugs on munin #788

Closed maxulysse closed 5 years ago

maxulysse commented 5 years ago

fix genome_base path in munin.config
fix markdup_java_options definition
include conf/resources.config in btb profile

PR checklist

[X] PR is made against dev branch
[X] This comment contains a description of changes (with reason)
[X] Ensure the test suite passes (./scripts/test.sh -p docker -t ALL).
[x] CHANGELOG.md is updated