ASCAT loci for download link timeout

[DoaneAS]

Describe the bug The url for the ASCTA loci file for GRCh38 as posted in the documentation appears to be dead.
https://export.uppmax.uu.se/b2015110/caw-references/b37/1000G_phase3_20130502_SNP_maf0.3.loci.tar.bz2

To Reproduce Steps to reproduce the behavior: 1.

aria2c https://export.uppmax.uu.se/b2015110/caw-references/b37/1000G_phase3_20130502_SNP_maf0.3.loci.tar.bz2

2. See error Please provide your error message

[#4be9a9 0B/0B CN:1 DL:0B]
08/04 02:13:44 [ERROR] CUID#7 - Download aborted. URI=https://export.uppmax.uu.se/b2015110/caw-references/b37/1000G_phase3_20130502_SNP_maf0.3.loci.tar.bz2
Exception: [AbstractCommand.cc:340] errorCode=2 Timeout.

Expected behavior A clear and concise description of what you expected to happen.

System (please complete the following information):

• Hardware: [e.g. HPC, Desktop, Cloud...]
• Executor: [e.g. slurm, local, awsbatch...]
• OS: [e.g. CentOS Linux, macOS, Linux Mint...]
• Version [e.g. 7, 10.13.6, 18.3...]

Nextflow (please complete the following information):

• Version: [e.g. 0.31.0]

Container engine (please complete the following information):

• Engine: [e.g. Conda, Docker or Singularity]
• version: [e.g. 1.0.0]

Container (please complete the following information):

• tag: [e.g. 1.0.0]

Sarek (please complete the following information):

• version: [e.g. 2.1.0]

Additional context Add any other context about the problem here.

[maxulysse]

Hi @DoaneAS Thanks a lot for your interest in this project.

We're currently porting this pipeline into the nf-core organisation: https://github.com/nf-core/sarek

The file you're interested in is at: https://export.uppmax.uu.se/sllstore2017079/Sarek/1000G_phase3_20130502_SNP_maf0.3.loci.gc

I'll update the documentation (cf #810)

Thanks again for finding and reporting this issue. All the best, Maxime

[DoaneAS]

Thank you @MaxUlysse, much appreciated!

And yes, I'm a big fan of nf-core, and helped a little with the ATAC-seq pipeline awhile back.