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SciLifeLab / TACA

Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm
MIT License
14 stars 16 forks source link

Implement CodeCoverage #416

Closed kedhammar closed 8 months ago

kedhammar commented 8 months ago

I merged #415 into a dev branch here on upstream to make the secrets accessible.

Now this PR upstream/master <-- upstream/codecov can be used to evaluate whether the GitHub Actions work as intended.

codecov[bot] commented 8 months ago

Codecov Report

Attention: 2289 lines in your changes are missing coverage. Please review.

Comparison is base (ef95707) 87.48% compared to head (66cd572) 13.38%. Report is 831 commits behind head on master.

Files Patch % Lines
taca/illumina/Runs.py 0.00% 520 Missing :warning:
taca/illumina/Standard_Runs.py 0.00% 470 Missing :warning:
taca/analysis/analysis.py 0.00% 167 Missing :warning:
taca/backup/backup.py 0.00% 165 Missing :warning:
taca/cleanup/cleanup.py 0.00% 159 Missing :warning:
taca/utils/bioinfo_tab.py 0.00% 127 Missing :warning:
taca/illumina/MiSeq_Runs.py 0.00% 111 Missing :warning:
taca/utils/statusdb.py 20.33% 94 Missing :warning:
taca/testing/create_uppmax_like_env.py 0.00% 85 Missing :warning:
taca/utils/misc.py 8.95% 61 Missing :warning:
... and 17 more
Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #416 +/- ## =========================================== - Coverage 87.48% 13.38% -74.10% =========================================== Files 23 28 +5 Lines 3724 3914 +190 =========================================== - Hits 3258 524 -2734 - Misses 466 3390 +2924 ```

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kedhammar commented 8 months ago

The coverage of course drop massively as a lot of tests have been outdated since last we used CodeCov.