SciLifeLab / TACA

Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm
MIT License
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Fix and improve TACA for handling QC runs #419

Closed kedhammar closed 7 months ago

kedhammar commented 7 months ago

Tested in isolated environment on ngi-preproc for handling a bunch of QC runs.

codecov[bot] commented 7 months ago

Codecov Report

Attention: Patch coverage is 74.24242% with 17 lines in your changes are missing coverage. Please review.

Project coverage is 21.79%. Comparing base (802cc78) to head (91f86ce).

Files Patch % Lines
taca/illumina/Runs.py 0.00% 7 Missing :warning:
taca/analysis/analysis_nanopore.py 86.04% 6 Missing :warning:
taca/nanopore/ONT_run_classes.py 84.61% 2 Missing :warning:
taca/analysis/analysis.py 0.00% 1 Missing :warning:
taca/illumina/MiSeq_Runs.py 0.00% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #419 +/- ## ========================================== + Coverage 20.46% 21.79% +1.33% ========================================== Files 28 28 Lines 3914 3936 +22 ========================================== + Hits 801 858 +57 + Misses 3113 3078 -35 ```

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kedhammar commented 7 months ago

I'll revisit this to fix failing lints and coverage next week after deploying #418 and addressing any mergre conflicts.