SciLifeLab / bcbb

Useful bioinformatics code, primarily in Python and R
http://bcbio.wordpress.com
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Brad patch to skip PDF report generation. Useful for testing. #212

Closed guillermo-carrasco closed 12 years ago

guillermo-carrasco commented 12 years ago

@chapmanb has proposed this patch to skip PDF report generation. It is very useful when testing (specially in Travis), as we can avoid installing all texlive dependencies and just test the pipeline functionalities. I've tested it and works perfectly in Travis and UPPMAX. You can see the travis build with this change here.

brainstorm commented 12 years ago

@guillermo-carrasco, that's great! Can you include (commit&push) the config directive in tests/data/automatic/post_process.yaml-sample (or similar file) as default for testing?

I think it's reasonable to rule it out by default in the automatic tests. I'll merge when you include this.