Run fastq-screen with only first read

SciLifeLab / bcbb

Useful bioinformatics code, primarily in Python and R

http://bcbio.wordpress.com

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Run fastq-screen with only first read #299

Closed parlundin closed 10 years ago

parlundin commented 10 years ago

Run fastq_screen with only read1 (never read2)

vezzi commented 10 years ago

Perfect Per!! I will wait for Travis CI to finish and then merge

remiolsen commented 10 years ago

@vezzi I believe travis will fail regardless. Some data the bcbio tests downloads has been changed permanently.

guillermo-carrasco commented 10 years ago

@remiolsen is right, the dataset that Brad has in his Amazon S3 is no longer compatible with our old-fashioned pipeline. One more point to speed up the change!

ewels commented 10 years ago

Fair enough - looks good, so I'll merge..