Variable expansion on config files

SciLifeLab / bcbb

Useful bioinformatics code, primarily in Python and R

http://bcbio.wordpress.com

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Closed brainstorm closed 13 years ago

brainstorm commented 13 years ago

$HOME among other env variables are not expanded correctly from the YAML files.

vals commented 13 years ago

In this branch https://github.com/vals/bcbb/tree/variable-expansion-uppmax I have made $VARIABLES work with the post processing config file, the test passes.

brainstorm commented 13 years ago

Thanks @vals for your pull request and fixes :)