SciLifeLab / facs

Fast and Accurate Classification of Sequences using Bloom filters
http://facs.scilifelab.se/
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Add an extra cleanup at the end of the test, bowtie1 results got overriden by bowtie2 #115

Closed brainstorm closed 10 years ago

brainstorm commented 10 years ago
Processing /pica/h1/roman/dev/facs/tests/data/synthetic_fastq/simngs_eschColi_K12_1000000.fastq
Counting sequences in /pica/h1/roman/dev/facs/tests/data/synthetic_fastq/simngs_eschColi_K12_1000000.fastq
Searching /pica/h1/roman/dev/facs/tests/data/synthetic_fastq/simngs_eschColi_K12_1000000.fastq against phiX
Process MemTimer-3:
Traceback (most recent call last):
  File "/usr/lib64/python2.6/multiprocessing/process.py", line 232, in _bootstrap
    self.run()
  File "/pica/h1/roman/.virtualenvs/facs/lib/python2.6/site-packages/memory_profiler.py", line 123, in run
    include_children=self.include_children)
  File "/pica/h1/roman/.virtualenvs/facs/lib/python2.6/site-packages/memory_profiler.py", line 51, in _get_memory
    mem += p.get_memory_info()[0] / _TWO_20
  File "/pica/h1/roman/.virtualenvs/facs/lib/python2.6/site-packages/psutil/__init__.py", line 758, in get_memory_info
    return self._platform_impl.get_memory_info()
  File "/pica/h1/roman/.virtualenvs/facs/lib/python2.6/site-packages/psutil/_pslinux.py", line 470, in wrapper
    raise NoSuchProcess(self.pid, self._process_name)
NoSuchProcess: process no longer exists (pid=17523)