Deprecated innocentive test, basic bowtie & bowtie2 versions test

[brainstorm]

For some reason, bowtie2 is not runnig on @UPPMAX yet. @guillermo-carrasco, can you check this out tomorrow?

[mariogiov]

I think there's something else going on there, but maybe I'm missing something. I load bowtie2 alright though:

mario@milou2 ~ $ MODULEPATH="/sw/mf/milou/applications:/sw/mf/milou/build-tools:/sw/mf/milou/compilers:/sw/mf/milou/environment:/sw/mf/milou/libraries:/sw/mf/milou/parallel" mario@milou2 ~ $ module load bioinfo-tools mario@milou2 ~ $ module load bowtie bowtie bowtie/0.12.7 bowtie/0.12.9 bowtie2 bowtie2/2.0.0-beta6 bowtie2/2.1.0 bowtie/0.12.6 bowtie/0.12.8 bowtie/1.0.0 bowtie2/2.0.0-beta5 bowtie2/2.0.2 mario@milou2 ~ $ module load bowtie2/2.1.0 mario@milou2 ~ $ which bowtie2 /sw/apps/bioinfo/bowtie2/2.1.0/milou/bin/bowtie2 mario@milou2 ~ $ bowtie2 --version /sw/apps/bioinfo/bowtie2/2.1.0/milou/bin/bowtie2-align version 2.1.0 64-bit Built on biologin.uppmax.uu.se Mon May 27 10:15:16 CEST 2013 Compiler: gcc version 4.7.3 (GCC) Options: -O3 -m64 -msse2 -funroll-loops -g3 Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

[brainstorm]

Indeed, from the cmdline it works, but no results are pushed to the CouchDB instance:

http://facs2.nopcode.org:5984/_utils/document.html?fastq_screen/6454e0822e48c768b02b036a4453b455

I'm not blaming the module system this time :P But something else is failing and I could not pinpoint what.

[guillermo-carrasco]

I'll open a issue for that :-)