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SciLifeLab / facs

Fast and Accurate Classification of Sequences using Bloom filters
http://facs.scilifelab.se/
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facs query -h #14

Closed henrikstranneheim closed 11 years ago

henrikstranneheim commented 11 years ago

Is not updated. Is the only option really: Options: -r reference bloom filter to query against

brainstorm commented 11 years ago

Solved in pullrequest #17, please @tzcoolman make sure I did not miss any of @henrikstranneheim points here.

tzcoolman commented 11 years ago

confirm @henrikstranneheim @brainstorm

henrikstranneheim commented 11 years ago

Why is this option added to query: -r input list containing all reference files, one per line

I see you still went with the tolerant rate instead of threshold value, but this tolerant rate seems far of: -t tolerance rate, default is 0.0005

I think we should spell bloom with a capital B e.g. Bloom.

tzcoolman commented 11 years ago

@henrikstranneheim Okay... I am on it. Plus, tolerance rate is match cutoff, default setting is around 0.3 ~ 0.4. 0.0005 is the default false positive rate for Bloom filter. Shouldnt be there