search

SciLifeLab / facs

Fast and Accurate Classification of Sequences using Bloom filters
http://facs.scilifelab.se/
Other
16 stars 9 forks source link

facs remove Example3 #23

Closed henrikstranneheim closed 11 years ago

henrikstranneheim commented 11 years ago

* glibc detected * ./facs: free(): invalid pointer: 0x00002abf680db010 *** ======= Backtrace: ========= /lib64/libc.so.6[0x3fa6875916] ./facs[0x402c52] ./facs[0x407dc8] /lib64/libc.so.6(__libc_start_main+0xfd)[0x3fa681ecdd] ./facs[0x4016d9] ======= Memory map: ======== 00400000-0040c000 r-xp 00000000 00:15 3107197168 /lynx/cvol/v26/b2012037/private/facs/facs/facs 0060b000-0060c000 rw-p 0000b000 00:15 3107197168 /lynx/cvol/v26/b2012037/private/facs/facs/facs 00981000-0132c000 rw-p 00000000 00:00 0 [heap] 38ad000000-38ad015000 r-xp 00000000 08:03 416403 /lib64/libz.so.1.2.3 38ad015000-38ad214000 ---p 00015000 08:03 416403 /lib64/libz.so.1.2.3 38ad214000-38ad215000 r--p 00014000 08:03 416403 /lib64/libz.so.1.2.3 38ad215000-38ad216000 rw-p 00015000 08:03 416403 /lib64/libz.so.1.2.3 3fa6400000-3fa6420000 r-xp 00000000 08:03 394073 /lib64/ld-2.12.so 3fa661f000-3fa6620000 r--p 0001f000 08:03 394073 /lib64/ld-2.12.so 3fa6620000-3fa6621000 rw-p 00020000 08:03 394073 /lib64/ld-2.12.so 3fa6621000-3fa6622000 rw-p 00000000 00:00 0 3fa6800000-3fa6989000 r-xp 00000000 08:03 394074 /lib64/libc-2.12.so 3fa6989000-3fa6b89000 ---p 00189000 08:03 394074 /lib64/libc-2.12.so 3fa6b89000-3fa6b8d000 r--p 00189000 08:03 394074 /lib64/libc-2.12.so 3fa6b8d000-3fa6b8e000 rw-p 0018d000 08:03 394074 /lib64/libc-2.12.so 3fa6b8e000-3fa6b93000 rw-p 00000000 00:00 0 3fa6c00000-3fa6c83000 r-xp 00000000 08:03 412474 /lib64/libm-2.12.so 3fa6c83000-3fa6e82000 ---p 00083000 08:03 412474 /lib64/libm-2.12.so 3fa6e82000-3fa6e83000 r--p 00082000 08:03 412474 /lib64/libm-2.12.so 3fa6e83000-3fa6e84000 rw-p 00083000 08:03 412474 /lib64/libm-2.12.so 3fa7400000-3fa7417000 r-xp 00000000 08:03 394568 /lib64/libpthread-2.12.so 3fa7417000-3fa7617000 ---p 00017000 08:03 394568 /lib64/libpthread-2.12.so 3fa7617000-3fa7618000 r--p 00017000 08:03 394568 /lib64/libpthread-2.12.so 3fa7618000-3fa7619000 rw-p 00018000 08:03 394568 /lib64/libpthread-2.12.so 3fa7619000-3fa761d000 rw-p 00000000 00:00 0 3fa7c00000-3fa7c07000 r-xp 00000000 08:03 394947 /lib64/librt-2.12.so 3fa7c07000-3fa7e06000 ---p 00007000 08:03 394947 /lib64/librt-2.12.so 3fa7e06000-3fa7e07000 r--p 00006000 08:03 394947 /lib64/librt-2.12.so 3fa7e07000-3fa7e08000 rw-p 00007000 08:03 394947 /lib64/librt-2.12.so 3fa8400000-3fa840d000 r-xp 00000000 08:03 264890 /usr/lib64/libgomp.so.1.0.0 3fa840d000-3fa860c000 ---p 0000d000 08:03 264890 /usr/lib64/libgomp.so.1.0.0 3fa860c000-3fa860d000 rw-p 0000c000 08:03 264890 /usr/lib64/libgomp.so.1.0.0 3fa9000000-3fa9016000 r-xp 00000000 08:03 412532 /lib64/libgcc_s-4.4.6-20120305.so.1 3fa9016000-3fa9215000 ---p 00016000 08:03 412532 /lib64/libgcc_s-4.4.6-20120305.so.1 3fa9215000-3fa9216000 rw-p 00015000 08:03 412532 /lib64/libgcc_s-4.4.6-20120305.so.1 2abf07949000-2abf0794a000 rw-p 00000000 00:00 0 2abf07968000-2abf0796d000 rw-p 00000000 00:00 0 2abf0796d000-2abf27be7000 r--s 00000000 00:15 2726700565 /lynx/cvol/v1/b2012094/Innocentive/data/Example/Example3.fq 2abf27be7000-2ac0bac37000 rw-p 00000000 00:00 0 2ac0bac37000-2ac0bac38000 ---p 00000000 00:00 0 2ac0bac38000-2ac0bae38000 rw-p 00000000 00:00 0 2ac0bae38000-2ac0bae39000 ---p 00000000 00:00 0 2ac0bae39000-2ac0bb039000 rw-p 00000000 00:00 0 2ac0bb039000-2ac0bb03a000 ---p 00000000 00:00 0 2ac0bb03a000-2ac0bb23a000 rw-p 00000000 00:00 0 2ac0bb23a000-2ac0bb23b000 ---p 00000000 00:00 0 2ac0bb23b000-2ac0bb43b000 rw-p 00000000 00:00 0 2ac0bb43b000-2ac0bb43c000 ---p 00000000 00:00 0 2ac0bb43c000-2ac0bb63c000 rw-p 00000000 00:00 0 2ac0bb63c000-2ac0bb63d000 ---p 00000000 00:00 0 2ac0bb63d000-2ac0bb83d000 rw-p 00000000 00:00 0 2ac0bb83d000-2ac0bb83e000 ---p 00000000 00:00 0 2ac0bb83e000-2ac0bba43000 rw-p 00000000 00:00 0 2ac0bc000000-2ac0bcbf4000 rw-p 00000000 00:00 0 2ac0bcbf4000-2ac0c0000000 ---p 00000000 00:00 0 2ac0c4000000-2ac0c4a2b000 rw-p 00000000 00:00 0 2ac0c4a2b000-2ac0c8000000 ---p 00000000 00:00 0 2ac0cc000000-2ac0cca3a000 rw-p 00000000 00:00 0 2ac0cca3a000-2ac0d0000000 ---p 00000000 00:00 0 2ac0d4000000-2ac0d4a48000 rw-p 00000000 00:00 0 2ac0d4a48000-2ac0d8000000 ---p 00000000 00:00 0 2ac0dc000000-2ac0de76c000 rw-p 00000000 00:00 0 2ac0de76c000-2ac0e0000000 ---p 00000000 00:00 0 2ac0e4000000-2ac0e49ae000 rw-p 00000000 00:00 0 2ac0e49ae000-2ac0e8000000 ---p 00000000 00:00 0 2ac0ec000000-2ac0ec9ef000 rw-p 00000000 00:00 0 2ac0ec9ef000-2ac0f0000000 ---p 00000000 00:00 0 7fff76134000-7fff7614a000 rw-p 00000000 00:00 0 [stack] 7fff761ff000-7fff76200000 r-xp 00000000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall] /var/spool/slurmd/job3017171/slurm_script: rad 17: 19178 Avbruten (SIGABRT) (minnesutskrift skapad)

tzcoolman commented 11 years ago

@henrikstranneheim Now extra line tolerant has been applied for facs remove. Example3.fq, testing1~3.fq has been checked. The result is okay