Performance/accuracy script, extracts information from CouchDB database

SciLifeLab / facs

Fast and Accurate Classification of Sequences using Bloom filters

http://facs.scilifelab.se/

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Performance/accuracy script, extracts information from CouchDB database #96

Closed brainstorm closed 10 years ago

brainstorm commented 10 years ago

Script started by @guillermo-carrasco, I followed it up.

Added local serialization in JSON.
Date parsing and diff.
No read is spiked in simNGS at the moment. As per issue https://github.com/SciLifeLab/facs/issues/81, we should spike a proper read.

brainstorm commented 10 years ago

@guillermo-carrasco, the increased number of reads might exceed Travis-CI testing. We might want to parametrize this in short and long running tests maybe.

I take it back, test_simngs.py is not part of nose's @attr('standard'), so there's no need to parametrize it for now.

guillermo-carrasco commented 10 years ago

Looks ok :+1: , yet some refactoring as you suggest is needed. Thanks!