Stand alone Hugin

[vezzi]

@b97pla @guillermo-carrasco this is a stand alone version of Hugin, no need of bcbio and scilifelab repo. I had some trouble installing package gdata, maybe is a common issue i installed it with pip hugin complained about some missing package in "atom" I then run this:

conda remove atom
conda install -f gdata

and magically it worked

I have not been able to test yet (fighting with trello keys). Anyway this is a devel brach

[guillermo-carrasco]

So one question, is this code copy & pasted from scilifelab? One of the problems we had is that the package gdata that you are using, is calling the old Google Docs API. If you look at the source project, last update was more than a year ago.

Instead, if you go to the Google developers documentation they tell you to use this api client, which is up to date. If we plan to keep using Google Drive, and we are moving this to standalone, I would suggest using the new API.

[b97pla]

@vezzi @guillermo-carrasco I would suggest separating out the google stuff into a separate repo, the hugin tool would be cleaner without it

[ewels]

@b97pla: We're actually going to remove the google docs stuff completely I think. @Galithil and I are currently working on a genomics status version of the two spreadsheets.

We figured that as this is currently broken due to a change in the gdocs API we'd be better off spending the time building something new rather than fixing something which people complain about a lot :)

[guillermo-carrasco]

yup, totally agree with @b97pla !