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SciML / Catalyst.jl

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
https://docs.sciml.ai/Catalyst/stable/
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Fix broken tests #1070

Closed TorkelE closed 1 month ago

TorkelE commented 1 month ago

Fixes the tests that have been broken by recent updates.

The long running for identifiability analysis has to do with us using array variables for representing unknown quantities, and there seems to be a problem with this (likely related to recent updates). Might be easiest to simple rewrite code to not use that, will have a look.

TorkelE commented 1 month ago

There is still some weird stuff with SI. I have been looking at it for a while and untangled it a bit, but still not fully sure how to finally fix it. SI being broken is probably what holds up the docs as well.

isaacsas commented 1 month ago

Sounds good. Feel free to merge this then when you want.

isaacsas commented 1 month ago

@TorkelE I'm going to merge this as I don't want to hold off much longer on getting PRs merged and making a release with the array fixes.