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SciML / DelayDiffEq.jl

Delay differential equation (DDE) solvers in Julia for the SciML scientific machine learning ecosystem. Covers neutral and retarded delay differential equations, and differential-algebraic equations.
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Precompilation issue (DelayDiffEq v5.40.6) #254

Closed sh2pro closed 1 year ago

sh2pro commented 1 year ago 
(base) jovyan@julia-ml-t3-medium:~/work$ julia
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.8.5 (2023-01-08)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

(@v1.8) pkg> activate .
  Activating new project at `~/work`

(work) pkg> add DelayDiffEq
    Updating registry at `/opt/julia/registries/General.toml`
   Resolving package versions...
    Updating `~/work/Project.toml`
  [bcd4f6db] + DelayDiffEq v5.40.6
    Updating `~/work/Manifest.toml`
  [79e6a3ab] + Adapt v3.5.0
  [ec485272] + ArnoldiMethod v0.2.0
  [4fba245c] + ArrayInterface v6.0.25
  [30b0a656] + ArrayInterfaceCore v0.1.29
  [6ba088a2] + ArrayInterfaceGPUArrays v0.2.2
  [015c0d05] + ArrayInterfaceOffsetArrays v0.1.7
  [b0d46f97] + ArrayInterfaceStaticArrays v0.1.5
  [dd5226c6] + ArrayInterfaceStaticArraysCore v0.1.3
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.5
  [2a0fbf3d] + CPUSummary v0.2.2
  [49dc2e85] + Calculus v0.5.1
  [d360d2e6] + ChainRulesCore v1.15.7
  [9e997f8a] + ChangesOfVariables v0.1.5
  [fb6a15b2] + CloseOpenIntervals v0.1.11
  [38540f10] + CommonSolve v0.2.3
  [bbf7d656] + CommonSubexpressions v0.3.0
  [34da2185] + Compat v4.5.0
  [187b0558] + ConstructionBase v1.4.1
  [adafc99b] + CpuId v0.3.1
  [9a962f9c] + DataAPI v1.14.0
  [864edb3b] + DataStructures v0.18.13
  [e2d170a0] + DataValueInterfaces v1.0.0
  [bcd4f6db] + DelayDiffEq v5.40.6
  [b429d917] + DensityInterface v0.4.0
  [2b5f629d] + DiffEqBase v6.114.2
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.12.2
  [b4f34e82] + Distances v0.10.7
  [31c24e10] + Distributions v0.25.80
  [ffbed154] + DocStringExtensions v0.9.3
  [fa6b7ba4] + DualNumbers v0.6.8
  [4e289a0a] + EnumX v1.0.4
  [d4d017d3] + ExponentialUtilities v1.22.0
  [e2ba6199] + ExprTools v0.1.8
  [7034ab61] + FastBroadcast v0.2.4
  [9aa1b823] + FastClosures v0.3.2
  [29a986be] + FastLapackInterface v1.2.8
  [1a297f60] + FillArrays v0.13.7
  [6a86dc24] + FiniteDiff v2.17.0
  [f6369f11] + ForwardDiff v0.10.34
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.1
  [46192b85] + GPUArraysCore v0.1.3
  [c145ed77] + GenericSchur v0.5.3
  [86223c79] + Graphs v1.7.4
  [3e5b6fbb] + HostCPUFeatures v0.1.14
  [34004b35] + HypergeometricFunctions v0.3.11
  [615f187c] + IfElse v0.1.1
  [d25df0c9] + Inflate v0.1.3
  [3587e190] + InverseFunctions v0.1.8
  [92d709cd] + IrrationalConstants v0.1.1
  [42fd0dbc] + IterativeSolvers v0.9.2
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.4.1
  [ef3ab10e] + KLU v0.4.0
  [ba0b0d4f] + Krylov v0.9.0
  [0b1a1467] + KrylovKit v0.6.0
  [10f19ff3] + LayoutPointers v0.1.13
  [d3d80556] + LineSearches v7.2.0
  [7ed4a6bd] + LinearSolve v1.34.1
  [2ab3a3ac] + LogExpFunctions v0.3.20
  [bdcacae8] + LoopVectorization v0.12.149
  [1914dd2f] + MacroTools v0.5.10
  [d125e4d3] + ManualMemory v0.1.8
  [e1d29d7a] + Missings v1.1.0
  [46d2c3a1] + MuladdMacro v0.2.4
  [d41bc354] + NLSolversBase v7.8.3
  [2774e3e8] + NLsolve v4.5.1
  [77ba4419] + NaNMath v1.0.1
  [8913a72c] + NonlinearSolve v1.3.0
  [6fe1bfb0] + OffsetArrays v1.12.9
  [bac558e1] + OrderedCollections v1.4.1
  [1dea7af3] + OrdinaryDiffEq v6.41.0
  [90014a1f] + PDMats v0.11.16
  [d96e819e] + Parameters v0.12.3
  [f517fe37] + Polyester v0.7.2
  [1d0040c9] + PolyesterWeave v0.2.1
  [d236fae5] + PreallocationTools v0.4.8
  [21216c6a] + Preferences v1.3.0
  [1fd47b50] + QuadGK v2.7.0
  [3cdcf5f2] + RecipesBase v1.3.3
  [731186ca] + RecursiveArrayTools v2.36.0
  [f2c3362d] + RecursiveFactorization v0.2.17
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.0
  [79098fc4] + Rmath v0.7.1
  [7e49a35a] + RuntimeGeneratedFunctions v0.5.5
  [3cdde19b] + SIMDDualNumbers v0.1.1
  [94e857df] + SIMDTypes v0.1.0
  [476501e8] + SLEEFPirates v0.6.38
  [0bca4576] + SciMLBase v1.81.1
  [e9a6253c] + SciMLNLSolve v0.1.3
  [efcf1570] + Setfield v1.1.1
  [727e6d20] + SimpleNonlinearSolve v0.1.8
  [699a6c99] + SimpleTraits v0.9.4
  [66db9d55] + SnoopPrecompile v1.0.3
  [a2af1166] + SortingAlgorithms v1.1.0
  [47a9eef4] + SparseDiffTools v1.30.0
  [e56a9233] + Sparspak v0.3.7
  [276daf66] + SpecialFunctions v2.1.7
  [aedffcd0] + Static v0.8.3
  [90137ffa] + StaticArrays v1.5.12
  [1e83bf80] + StaticArraysCore v1.4.0
  [82ae8749] + StatsAPI v1.5.0
  [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.1.1
  [7792a7ef] + StrideArraysCore v0.4.6
  [2efcf032] + SymbolicIndexingInterface v0.2.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.10.0
  [8290d209] + ThreadingUtilities v0.5.1
  [d5829a12] + TriangularSolve v0.1.19
  [410a4b4d] + Tricks v0.1.6
  [3a884ed6] + UnPack v1.0.2
  [3d5dd08c] + VectorizationBase v0.21.58
  [19fa3120] + VertexSafeGraphs v0.2.0
  [700de1a5] + ZygoteRules v0.2.2
  [efe28fd5] + OpenSpecFun_jll v0.5.5+0
  [f50d1b31] + Rmath_jll v0.4.0+0
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8ba89e20] + Distributed
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [9fa8497b] + Future
  [b77e0a4c] + InteractiveUtils
  [b27032c2] + LibCURL v0.6.3
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.8.0
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays
  [10745b16] + Statistics
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.0
  [a4e569a6] + Tar v1.10.1
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.0.1+0
  [deac9b47] + LibCURL_jll v7.84.0+0
  [29816b5a] + LibSSH2_jll v1.10.2+0
  [c8ffd9c3] + MbedTLS_jll v2.28.0+0
  [14a3606d] + MozillaCACerts_jll v2022.2.1
  [4536629a] + OpenBLAS_jll v0.3.20+0
  [05823500] + OpenLibm_jll v0.8.1+0
  [bea87d4a] + SuiteSparse_jll v5.10.1+0
  [83775a58] + Zlib_jll v1.2.12+3
  [8e850b90] + libblastrampoline_jll v5.1.1+0
  [8e850ede] + nghttp2_jll v1.48.0+0
  [3f19e933] + p7zip_jll v17.4.0+0
Precompiling project...
  ✗ DelayDiffEq
  0 dependencies successfully precompiled in 49 seconds. 125 already precompiled. 1 skipped during auto due to previous errors.
  1 dependency errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the package

(work) pkg> st
Status `~/work/Project.toml`
  [bcd4f6db] DelayDiffEq v5.40.6

(work) pkg>
devmotion commented 1 year ago

What is the output of ] precompile DelayDiffEq?

sh2pro commented 1 year ago

I've removed the entire Julia depot and started over. This fixed the problem, so the issue is probably not in DelayDiffEq. This also means I can't reproduce the problem, so I'm closing this issue