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SciML / DiffEqFlux.jl

Pre-built implicit layer architectures with O(1) backprop, GPUs, and stiff+non-stiff DE solvers, demonstrating scientific machine learning (SciML) and physics-informed machine learning methods
https://docs.sciml.ai/DiffEqFlux/stable
MIT License
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Error when running copy-pasteable code from stable documentation #634

Closed dom-linkevicius closed 3 years ago

dom-linkevicius commented 3 years ago

Hello, I am quite new to using all of these Julia packages for neural ODEs and machine learning. I was trying to run the example code from the stable documentation given here. For completeness, it is:

using DiffEqFlux, DifferentialEquations, Plots, GalacticOptim

u0 = Float32[2.0; 0.0] 
datasize = 30 
tspan = (0.0f0, 1.5f0) 
tsteps = range(tspan[1], tspan[2], length = datasize)

function trueODEfunc(du, u, p, t)
    true_A = [-0.1 2.0; -2.0 -0.1]
    du .= ((u.^3)'true_A)'
end

prob_trueode = ODEProblem(trueODEfunc, u0, tspan)
ode_data = Array(solve(prob_trueode, Tsit5(), saveat = tsteps))

dudt2 = FastChain((x, p) -> x.^3, 
                  FastDense(2, 50, tanh),
                  FastDense(50, 2))
prob_neuralode = NeuralODE(dudt2, tspan, Tsit5(), saveat = tsteps)

function predict_neuralode(p)
  Array(prob_neuralode(u0, p))
end

function loss_neuralode(p)
    pred = predict_neuralode(p)
    loss = sum(abs2, ode_data .- pred)
    return loss, pred
end

callback = function (p, l, pred; doplot = true)
  display(l)
  plt = scatter(tsteps, ode_data[1,:], label = "data")
  scatter!(plt, tsteps, pred[1,:], label = "prediction")
  if doplot
    display(plot(plt))
  end
  return false
end

result_neuralode = DiffEqFlux.sciml_train(loss_neuralode, prob_neuralode.p,
                                          cb = callback)

And the error I get is (quite lengthy): 

ERROR: LoadError: ArgumentError: tuple must be non-empty
Stacktrace:
  [1] first(#unused#::Tuple{})
    @ Base ./tuple.jl:134
  [2] _unapply(t::Nothing, xs::Tuple{})
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/lib/lib.jl:172
  [3] _unapply(t::Tuple{Nothing}, xs::Tuple{}) (repeats 2 times)
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/lib/lib.jl:176
  [4] _unapply(t::Tuple{NTuple{6, Nothing}, Tuple{Nothing}}, xs::Tuple{Nothing, Nothing, Nothing, Vector{Float32}, Vector{Float32}, Nothing})
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/lib/lib.jl:177
  [5] unapply(t::Tuple{NTuple{6, Nothing}, Tuple{Nothing}}, xs::Tuple{Nothing, Nothing, Nothing, Vector{Float32}, Vector{Float32}, Nothing})
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/lib/lib.jl:186
  [6] (::Zygote.var"#203#204"{Tuple{NTuple{6, Nothing}, Tuple{Nothing}}, Zygote.var"#kw_zpullback#40"{DiffEqSensitivity.var"#adjoint_sensitivity_backpass#177"{Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, Tsit5, InterpolatingAdjoint{0, true, Val{:central}, ZygoteVJP, Bool}, Vector{Float32}, Vector{Float32}, Tuple{}, Colon, NamedTuple{(), Tuple{}}}}})(Δ::Matrix{Float32})
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/lib/lib.jl:204
  [7] (::Zygote.var"#1733#back#205"{Zygote.var"#203#204"{Tuple{NTuple{6, Nothing}, Tuple{Nothing}}, Zygote.var"#kw_zpullback#40"{DiffEqSensitivity.var"#adjoint_sensitivity_backpass#177"{Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, Tsit5, InterpolatingAdjoint{0, true, Val{:central}, ZygoteVJP, Bool}, Vector{Float32}, Vector{Float32}, Tuple{}, Colon, NamedTuple{(), Tuple{}}}}}})(Δ::Matrix{Float32})
    @ Zygote ~/.julia/packages/ZygoteRules/OjfTt/src/adjoint.jl:59
  [8] Pullback
    @ ~/.julia/packages/DiffEqBase/OPDgm/src/solve.jl:73 [inlined]
  [9] (::typeof(∂(#solve#43)))(Δ::Matrix{Float32})
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/compiler/interface2.jl:0
 [10] (::Zygote.var"#203#204"{Tuple{NTuple{6, Nothing}, Tuple{Nothing}}, typeof(∂(#solve#43))})(Δ::Matrix{Float32})
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/lib/lib.jl:203
 [11] (::Zygote.var"#1733#back#205"{Zygote.var"#203#204"{Tuple{NTuple{6, Nothing}, Tuple{Nothing}}, typeof(∂(#solve#43))}})(Δ::Matrix{Float32})
    @ Zygote ~/.julia/packages/ZygoteRules/OjfTt/src/adjoint.jl:59
 [12] Pullback
    @ ~/.julia/packages/DiffEqBase/OPDgm/src/solve.jl:68 [inlined]
 [13] (::typeof(∂(solve##kw)))(Δ::Matrix{Float32})
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/compiler/interface2.jl:0
 [14] (::Zygote.var"#203#204"{Tuple{Tuple{Nothing, Nothing, Nothing}, Tuple{Nothing}}, typeof(∂(solve##kw))})(Δ::Matrix{Float32})
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/lib/lib.jl:203
 [15] #1733#back
    @ ~/.julia/packages/ZygoteRules/OjfTt/src/adjoint.jl:59 [inlined]
 [16] Pullback
    @ ~/.julia/packages/DiffEqFlux/Zt8Em/src/neural_de.jl:77 [inlined]
 [17] (::typeof(∂(λ)))(Δ::Matrix{Float32})
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/compiler/interface2.jl:0
 [18] Pullback
    @ /disk/scratch/s1788788/NODE_work/example.jl:38 [inlined]
 [19] (::typeof(∂(predict_neuralode)))(Δ::Matrix{Float32})
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/compiler/interface2.jl:0
 [20] Pullback
    @ /disk/scratch/s1788788/NODE_work/example.jl:44 [inlined]
 [21] Pullback
    @ ~/.julia/packages/DiffEqFlux/Zt8Em/src/train.jl:86 [inlined]
 [22] #203
    @ ~/.julia/packages/Zygote/BCfwJ/src/lib/lib.jl:203 [inlined]
 [23] #1733#back
    @ ~/.julia/packages/ZygoteRules/OjfTt/src/adjoint.jl:59 [inlined]
 [24] Pullback
    @ ~/.julia/packages/SciMLBase/n3U0M/src/problems/basic_problems.jl:107 [inlined]
 [25] #203
    @ ~/.julia/packages/Zygote/BCfwJ/src/lib/lib.jl:203 [inlined]
 [26] #1733#back
    @ ~/.julia/packages/ZygoteRules/OjfTt/src/adjoint.jl:59 [inlined]
 [27] Pullback
    @ ~/.julia/packages/SciMLBase/n3U0M/src/problems/basic_problems.jl:107 [inlined]
 [28] #203
    @ ~/.julia/packages/Zygote/BCfwJ/src/lib/lib.jl:203 [inlined]
 [29] (::Zygote.var"#1733#back#205"{Zygote.var"#203#204"{Tuple{Tuple{Nothing, Nothing}, Int64}, typeof(∂(λ))}})(Δ::Tuple{Float32, Nothing})
    @ Zygote ~/.julia/packages/ZygoteRules/OjfTt/src/adjoint.jl:59
 [30] Pullback
    @ ~/.julia/packages/GalacticOptim/paH6q/src/solve.jl:91 [inlined]
 [31] (::typeof(∂(λ)))(Δ::Float32)
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/compiler/interface2.jl:0
 [32] (::Zygote.var"#84#85"{Params, typeof(∂(λ)), Zygote.Context})(Δ::Float32)
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/compiler/interface.jl:343
 [33] gradient(f::Function, args::Params)
    @ Zygote ~/.julia/packages/Zygote/BCfwJ/src/compiler/interface.jl:76
 [34] __solve(prob::WARNING: both Flux and Iterators export "flatten"; uses of it in module DiffEqFlux must be qualified
WARNING: both Flux and Tracker export "gradient"; uses of it in module GalacticOptim must be qualified
WARNING: both Flux and Distributions export "params"; uses of it in module DiffEqFlux must be qualified
WARNING: both Iterators and Flux export "flatten"; uses of it in module GalacticOptim must be qualified
OptimizationProblem{false, OptimizationFunction{false, GalacticOptim.AutoZygote, OptimizationFunction{true, GalacticOptim.AutoZygote, DiffEqFlux.var"#73#78"{typeof(loss_neuralode)}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, GalacticOptim.var"#148#158"{GalacticOptim.var"#147#157"{OptimizationFunction{true, GalacticOptim.AutoZygote, DiffEqFlux.var"#73#78"{typeof(loss_neuralode)}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, Nothing}}, GalacticOptim.var"#151#161"{GalacticOptim.var"#147#157"{OptimizationFunction{true, GalacticOptim.AutoZygote, DiffEqFlux.var"#73#78"{typeof(loss_neuralode)}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, Nothing}}, GalacticOptim.var"#156#166", Nothing, Nothing, Nothing}, Vector{Float32}, SciMLBase.NullParameters, Nothing, Nothing, Nothing, Nothing, Base.Iterators.Pairs{Symbol, var"#3#5", Tuple{Symbol}, NamedTuple{(:cb,), Tuple{var"#3#5"}}}}, opt::ADAM, data::Base.Iterators.Cycle{Tuple{GalacticOptim.NullData}}; maxiters::Int64, cb::Function, progress::Bool, save_best::Bool, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ GalacticOptim ~/.julia/packages/GalacticOptim/paH6q/src/solve.jl:90
 [35] #solve#476
    @ ~/.julia/packages/SciMLBase/n3U0M/src/solve.jl:3 [inlined]
 [36] sciml_train(::typeof(loss_neuralode), ::Vector{Float32}, ::Nothing, ::Nothing; lower_bounds::Nothing, upper_bounds::Nothing, maxiters::Nothing, kwargs::Base.Iterators.Pairs{Symbol, var"#3#5", Tuple{Symbol}, NamedTuple{(:cb,), Tuple{var"#3#5"}}})
    @ DiffEqFlux ~/.julia/packages/DiffEqFlux/Zt8Em/src/train.jl:104
 [37] top-level scope
    @ /disk/scratch/s1788788/NODE_work/example.jl:62

I am running this on Ubuntu 20.04.3, using Julia v1.6.3, DiffEqFlux v1.39.0, DifferentialEquations v6.19.0, Plots v1.22.3 and GalacticOptim v1.3.0. Any help at all is appreciated, if anyone has any pointers or further questions - I'd be glad to elaborate.

ChrisRackauckas commented 3 years ago

I can't reproduce. Can you share ]st -m? Try updating again and see if it goes away: there was a patch in Zygote that caused some issues but everything should've gotten fixed.

dom-linkevicius commented 3 years ago

Many thanks for the response! Update fixed it. Just out of curiosity got the ]st -m before and after if anyone in the future is curious.

Before:

(@v1.6) pkg> st -m
      Status `~/.julia/environments/v1.6/Manifest.toml`
  [621f4979] AbstractFFTs v1.0.1
  [1520ce14] AbstractTrees v0.3.4
  [79e6a3ab] Adapt v3.3.1
  [ec485272] ArnoldiMethod v0.1.0
  [4fba245c] ArrayInterface v3.1.33
  [4c555306] ArrayLayouts v0.7.6
  [13072b0f] AxisAlgorithms v1.0.0
  [ab4f0b2a] BFloat16s v0.1.0
  [aae01518] BandedMatrices v0.16.11
  [62783981] BitTwiddlingConvenienceFunctions v0.1.0
  [764a87c0] BoundaryValueDiffEq v2.7.1
  [fa961155] CEnum v0.4.1
  [2a0fbf3d] CPUSummary v0.1.5
  [00ebfdb7] CSTParser v3.2.4
  [052768ef] CUDA v3.4.2
  [082447d4] ChainRules v1.11.6
  [d360d2e6] ChainRulesCore v1.7.0
  [fb6a15b2] CloseOpenIntervals v0.1.2
  [944b1d66] CodecZlib v0.7.0
  [35d6a980] ColorSchemes v3.15.0
  [3da002f7] ColorTypes v0.11.0
  [5ae59095] Colors v0.12.8
  [861a8166] Combinatorics v1.0.2
  [a80b9123] CommonMark v0.8.3
  [38540f10] CommonSolve v0.2.0
  [bbf7d656] CommonSubexpressions v0.3.0
  [34da2185] Compat v3.39.0
  [b152e2b5] CompositeTypes v0.1.2
  [88cd18e8] ConsoleProgressMonitor v0.1.2
  [187b0558] ConstructionBase v1.3.0
  [d38c429a] Contour v0.5.7
  [a8cc5b0e] Crayons v4.0.4
  [754358af] DEDataArrays v0.2.0
  [9a962f9c] DataAPI v1.9.0
  [82cc6244] DataInterpolations v3.6.0
  [864edb3b] DataStructures v0.18.10
  [e2d170a0] DataValueInterfaces v1.0.0
  [bcd4f6db] DelayDiffEq v5.31.1
  [2b5f629d] DiffEqBase v6.73.2
  [459566f4] DiffEqCallbacks v2.17.0
  [5a0ffddc] DiffEqFinancial v2.4.0
  [aae7a2af] DiffEqFlux v1.39.0
  [c894b116] DiffEqJump v7.3.1
  [77a26b50] DiffEqNoiseProcess v5.9.0
  [055956cb] DiffEqPhysics v3.9.0
  [41bf760c] DiffEqSensitivity v6.49.1
  [163ba53b] DiffResults v1.0.3
  [b552c78f] DiffRules v1.3.1
  [0c46a032] DifferentialEquations v6.19.0
  [c619ae07] DimensionalPlotRecipes v1.2.0
  [b4f34e82] Distances v0.10.4
  [31c24e10] Distributions v0.25.16
  [ced4e74d] DistributionsAD v0.6.31
  [ffbed154] DocStringExtensions v0.8.5
  [5b8099bc] DomainSets v0.5.7
  [7c1d4256] DynamicPolynomials v0.3.20
  [da5c29d0] EllipsisNotation v1.1.0
  [d4d017d3] ExponentialUtilities v1.10.0
  [e2ba6199] ExprTools v0.1.6
  [c87230d0] FFMPEG v0.4.1
  [7a1cc6ca] FFTW v1.4.5
  [7034ab61] FastBroadcast v0.1.8
  [9aa1b823] FastClosures v0.3.2
  [1a297f60] FillArrays v0.12.6
  [6a86dc24] FiniteDiff v2.8.1
  [53c48c17] FixedPointNumbers v0.8.4
  [587475ba] Flux v0.12.7
  [59287772] Formatting v0.4.2
  [f6369f11] ForwardDiff v0.10.19
  [069b7b12] FunctionWrappers v1.1.2
  [d9f16b24] Functors v0.2.5
  [0c68f7d7] GPUArrays v8.1.1
  [61eb1bfa] GPUCompiler v0.12.9
  [28b8d3ca] GR v0.59.0
  [a75be94c] GalacticOptim v1.3.0
  [5c1252a2] GeometryBasics v0.4.1
  [af5da776] GlobalSensitivity v1.2.1
  [42e2da0e] Grisu v1.0.2
  [cd3eb016] HTTP v0.9.16
  [3e5b6fbb] HostCPUFeatures v0.1.4
  [0e44f5e4] Hwloc v2.0.0
  [7869d1d1] IRTools v0.4.3
  [615f187c] IfElse v0.1.0
  [d25df0c9] Inflate v0.1.2
  [83e8ac13] IniFile v0.5.0
  [a98d9a8b] Interpolations v0.13.4
  [8197267c] IntervalSets v0.5.3
  [92d709cd] IrrationalConstants v0.1.0
  [c8e1da08] IterTools v1.3.0
  [42fd0dbc] IterativeSolvers v0.9.1
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.3.0
  [682c06a0] JSON v0.21.2
  [98e50ef6] JuliaFormatter v0.15.11
  [e5e0dc1b] Juno v0.8.4
  [5ab0869b] KernelDensity v0.6.3
  [929cbde3] LLVM v4.6.0
  [b964fa9f] LaTeXStrings v1.2.1
  [2ee39098] LabelledArrays v1.6.5
  [23fbe1c1] Latexify v0.15.6
  [a5e1c1ea] LatinHypercubeSampling v1.8.0
  [73f95e8e] LatticeRules v0.0.1
  [10f19ff3] LayoutPointers v0.1.3
  [1d6d02ad] LeftChildRightSiblingTrees v0.1.2
  [093fc24a] LightGraphs v1.3.5
  [d3d80556] LineSearches v7.1.1
  [2ab3a3ac] LogExpFunctions v0.3.3
  [e6f89c97] LoggingExtras v0.4.7
  [bdcacae8] LoopVectorization v0.12.81
  [1914dd2f] MacroTools v0.5.8
  [d125e4d3] ManualMemory v0.1.6
  [739be429] MbedTLS v1.0.3
  [442fdcdd] Measures v0.3.1
  [e89f7d12] Media v0.5.0
  [e1d29d7a] Missings v1.0.2
  [961ee093] ModelingToolkit v5.26.0
  [46d2c3a1] MuladdMacro v0.2.2
  [f9640e96] MultiScaleArrays v1.8.1
  [102ac46a] MultivariatePolynomials v0.3.18
  [d8a4904e] MutableArithmetics v0.2.20
  [d41bc354] NLSolversBase v7.8.1
  [2774e3e8] NLsolve v4.5.1
  [872c559c] NNlib v0.7.29
  [a00861dc] NNlibCUDA v0.1.9
  [77ba4419] NaNMath v0.3.5
  [8913a72c] NonlinearSolve v0.3.11
  [6fe1bfb0] OffsetArrays v1.10.7
  [429524aa] Optim v1.4.1
  [bac558e1] OrderedCollections v1.4.1
  [1dea7af3] OrdinaryDiffEq v5.64.0
  [90014a1f] PDMats v0.11.1
  [65888b18] ParameterizedFunctions v5.11.0
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.0.4
  [ccf2f8ad] PlotThemes v2.0.1
  [995b91a9] PlotUtils v1.0.14
  [91a5bcdd] Plots v1.22.3
  [e409e4f3] PoissonRandom v0.4.0
  [f517fe37] Polyester v0.5.2
  [1d0040c9] PolyesterWeave v0.1.0
  [85a6dd25] PositiveFactorizations v0.2.4
  [d236fae5] PreallocationTools v0.1.1
  [21216c6a] Preferences v1.2.2
  [33c8b6b6] ProgressLogging v0.1.4
  [92933f4c] ProgressMeter v1.7.1
  [1fd47b50] QuadGK v2.4.2
  [8a4e6c94] QuasiMonteCarlo v0.2.3
  [74087812] Random123 v1.4.2
  [e6cf234a] RandomNumbers v1.5.3
  [c84ed2f1] Ratios v0.4.2
  [3cdcf5f2] RecipesBase v1.1.2
  [01d81517] RecipesPipeline v0.4.1
  [731186ca] RecursiveArrayTools v2.17.2
  [f2c3362d] RecursiveFactorization v0.2.4
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.1.3
  [ae5879a3] ResettableStacks v1.1.1
  [37e2e3b7] ReverseDiff v1.9.0
  [79098fc4] Rmath v0.7.0
  [7e49a35a] RuntimeGeneratedFunctions v0.5.3
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.27
  [1bc83da4] SafeTestsets v0.0.1
  [0bca4576] SciMLBase v1.19.0
  [6c6a2e73] Scratch v1.1.0
  [efcf1570] Setfield v0.7.1
  [992d4aef] Showoff v1.0.3
  [699a6c99] SimpleTraits v0.9.4
  [ed01d8cd] Sobol v1.5.0
  [a2af1166] SortingAlgorithms v1.0.1
  [47a9eef4] SparseDiffTools v1.16.5
  [276daf66] SpecialFunctions v1.7.0
  [860ef19b] StableRNGs v1.0.0
  [aedffcd0] Static v0.3.3
  [90137ffa] StaticArrays v1.2.12
  [82ae8749] StatsAPI v1.0.0
  [2913bbd2] StatsBase v0.33.10
  [4c63d2b9] StatsFuns v0.9.12
  [9672c7b4] SteadyStateDiffEq v1.6.5
  [789caeaf] StochasticDiffEq v6.36.0
  [7792a7ef] StrideArraysCore v0.2.4
  [09ab397b] StructArrays v0.6.3
  [c3572dad] Sundials v4.5.4
  [d1185830] SymbolicUtils v0.13.5
  [0c5d862f] Symbolics v1.4.2
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.5.2
  [5d786b92] TerminalLoggers v0.1.4
  [8290d209] ThreadingUtilities v0.4.6
  [a759f4b9] TimerOutputs v0.5.13
  [0796e94c] Tokenize v0.5.21
  [9f7883ad] Tracker v0.2.16
  [3bb67fe8] TranscodingStreams v0.9.6
  [592b5752] Trapz v2.0.3
  [a2a6695c] TreeViews v0.3.0
  [d5829a12] TriangularSolve v0.1.6
  [5c2747f8] URIs v1.3.0
  [3a884ed6] UnPack v1.0.2
  [1986cc42] Unitful v1.9.0
  [3d5dd08c] VectorizationBase v0.21.12
  [19fa3120] VertexSafeGraphs v0.1.2
  [efce3f68] WoodburyMatrices v0.5.3
  [a5390f91] ZipFile v0.9.4
  [e88e6eb3] Zygote v0.6.25
  [700de1a5] ZygoteRules v0.2.1
  [6e34b625] Bzip2_jll v1.0.8+0
  [83423d85] Cairo_jll v1.16.1+0
  [5ae413db] EarCut_jll v2.2.3+0
  [2e619515] Expat_jll v2.2.10+0
  [b22a6f82] FFMPEG_jll v4.4.0+0
  [f5851436] FFTW_jll v3.3.10+0
  [a3f928ae] Fontconfig_jll v2.13.93+0
  [d7e528f0] FreeType2_jll v2.10.4+0
  [559328eb] FriBidi_jll v1.0.10+0
  [0656b61e] GLFW_jll v3.3.5+0
  [d2c73de3] GR_jll v0.59.0+0
  [78b55507] Gettext_jll v0.21.0+0
  [7746bdde] Glib_jll v2.68.3+0
  [3b182d85] Graphite2_jll v1.3.14+0
  [2e76f6c2] HarfBuzz_jll v2.8.1+0
  [e33a78d0] Hwloc_jll v2.5.0+0
  [1d5cc7b8] IntelOpenMP_jll v2018.0.3+2
  [aacddb02] JpegTurbo_jll v2.1.0+0
  [c1c5ebd0] LAME_jll v3.100.1+0
  [dad2f222] LLVMExtra_jll v0.0.11+0
  [dd4b983a] LZO_jll v2.10.1+0
  [e9f186c6] Libffi_jll v3.2.2+0
  [d4300ac3] Libgcrypt_jll v1.8.7+0
  [7e76a0d4] Libglvnd_jll v1.3.0+3
  [7add5ba3] Libgpg_error_jll v1.42.0+0
  [94ce4f54] Libiconv_jll v1.16.1+1
  [4b2f31a3] Libmount_jll v2.35.0+0
  [89763e89] Libtiff_jll v4.3.0+0
  [38a345b3] Libuuid_jll v2.36.0+0
  [856f044c] MKL_jll v2021.1.1+2
  [e7412a2a] Ogg_jll v1.3.5+0
  [458c3c95] OpenSSL_jll v1.1.10+0
  [efe28fd5] OpenSpecFun_jll v0.5.5+0
  [91d4177d] Opus_jll v1.3.2+0
  [2f80f16e] PCRE_jll v8.44.0+0
  [30392449] Pixman_jll v0.40.1+0
  [ea2cea3b] Qt5Base_jll v5.15.3+0
  [f50d1b31] Rmath_jll v0.3.0+0
  [fb77eaff] Sundials_jll v5.2.0+1
  [a2964d1f] Wayland_jll v1.19.0+0
  [2381bf8a] Wayland_protocols_jll v1.18.0+4
  [02c8fc9c] XML2_jll v2.9.12+0
  [aed1982a] XSLT_jll v1.1.34+0
  [4f6342f7] Xorg_libX11_jll v1.6.9+4
  [0c0b7dd1] Xorg_libXau_jll v1.0.9+4
  [935fb764] Xorg_libXcursor_jll v1.2.0+4
  [a3789734] Xorg_libXdmcp_jll v1.1.3+4
  [1082639a] Xorg_libXext_jll v1.3.4+4
  [d091e8ba] Xorg_libXfixes_jll v5.0.3+4
  [a51aa0fd] Xorg_libXi_jll v1.7.10+4
  [d1454406] Xorg_libXinerama_jll v1.1.4+4
  [ec84b674] Xorg_libXrandr_jll v1.5.2+4
  [ea2f1a96] Xorg_libXrender_jll v0.9.10+4
  [14d82f49] Xorg_libpthread_stubs_jll v0.1.0+3
  [c7cfdc94] Xorg_libxcb_jll v1.13.0+3
  [cc61e674] Xorg_libxkbfile_jll v1.1.0+4
  [12413925] Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] Xorg_xcb_util_jll v0.4.0+1
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] Xorg_xkbcomp_jll v1.4.2+4
  [33bec58e] Xorg_xkeyboard_config_jll v2.27.0+4
  [c5fb5394] Xorg_xtrans_jll v1.4.0+3
  [3161d3a3] Zstd_jll v1.5.0+0
  [0ac62f75] libass_jll v0.15.1+0
  [f638f0a6] libfdk_aac_jll v2.0.2+0
  [b53b4c65] libpng_jll v1.6.38+0
  [f27f6e37] libvorbis_jll v1.3.7+0
  [1270edf5] x264_jll v2021.5.5+0
  [dfaa095f] x265_jll v3.5.0+0
  [d8fb68d0] xkbcommon_jll v0.9.1+5
  [0dad84c5] ArgTools
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8bb1440f] DelimitedFiles
  [8ba89e20] Distributed
  [f43a241f] Downloads
  [9fa8497b] Future
  [b77e0a4c] InteractiveUtils
  [4af54fe1] LazyArtifacts
  [b27032c2] LibCURL
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions
  [44cfe95a] Pkg
  [de0858da] Printf
  [9abbd945] Profile
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays
  [10745b16] Statistics
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML
  [a4e569a6] Tar
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll
  [deac9b47] LibCURL_jll
  [29816b5a] LibSSH2_jll
  [c8ffd9c3] MbedTLS_jll
  [14a3606d] MozillaCACerts_jll
  [4536629a] OpenBLAS_jll
  [05823500] OpenLibm_jll
  [bea87d4a] SuiteSparse_jll
  [83775a58] Zlib_jll
  [8e850ede] nghttp2_jll
  [3f19e933] p7zip_jll

After:

(@v1.6) pkg> st -m
      Status `~/.julia/environments/v1.6/Manifest.toml`
  [621f4979] AbstractFFTs v1.0.1
  [1520ce14] AbstractTrees v0.3.4
  [79e6a3ab] Adapt v3.3.1
  [ec485272] ArnoldiMethod v0.1.0
  [4fba245c] ArrayInterface v3.1.33
  [4c555306] ArrayLayouts v0.7.6
  [13072b0f] AxisAlgorithms v1.0.0
  [ab4f0b2a] BFloat16s v0.1.0
  [aae01518] BandedMatrices v0.16.11
  [e2ed5e7c] Bijections v0.1.3
  [62783981] BitTwiddlingConvenienceFunctions v0.1.0
  [764a87c0] BoundaryValueDiffEq v2.7.1
  [fa961155] CEnum v0.4.1
  [2a0fbf3d] CPUSummary v0.1.5
  [00ebfdb7] CSTParser v3.2.4
  [052768ef] CUDA v3.3.6
  [7057c7e9] Cassette v0.3.9
  [082447d4] ChainRules v1.11.6
  [d360d2e6] ChainRulesCore v1.7.2
  [fb6a15b2] CloseOpenIntervals v0.1.2
  [944b1d66] CodecZlib v0.7.0
  [35d6a980] ColorSchemes v3.15.0
  [3da002f7] ColorTypes v0.11.0
  [5ae59095] Colors v0.12.8
  [861a8166] Combinatorics v1.0.2
  [a80b9123] CommonMark v0.8.3
  [38540f10] CommonSolve v0.2.0
  [bbf7d656] CommonSubexpressions v0.3.0
  [34da2185] Compat v3.39.0
  [b152e2b5] CompositeTypes v0.1.2
  [88cd18e8] ConsoleProgressMonitor v0.1.2
  [187b0558] ConstructionBase v1.3.0
  [d38c429a] Contour v0.5.7
  [a8cc5b0e] Crayons v4.0.4
  [754358af] DEDataArrays v0.2.0
  [9a962f9c] DataAPI v1.9.0
  [82cc6244] DataInterpolations v3.6.0
  [864edb3b] DataStructures v0.18.10
  [e2d170a0] DataValueInterfaces v1.0.0
  [bcd4f6db] DelayDiffEq v5.31.1
  [2b5f629d] DiffEqBase v6.73.2
  [459566f4] DiffEqCallbacks v2.17.0
  [5a0ffddc] DiffEqFinancial v2.4.0
  [aae7a2af] DiffEqFlux v1.43.0
  [c894b116] DiffEqJump v7.3.1
  [77a26b50] DiffEqNoiseProcess v5.9.0
  [055956cb] DiffEqPhysics v3.9.0
  [41bf760c] DiffEqSensitivity v6.59.0
  [163ba53b] DiffResults v1.0.3
  [b552c78f] DiffRules v1.3.1
  [0c46a032] DifferentialEquations v6.19.0
  [c619ae07] DimensionalPlotRecipes v1.2.0
  [b4f34e82] Distances v0.10.4
  [31c24e10] Distributions v0.25.18
  [ced4e74d] DistributionsAD v0.6.31
  [ffbed154] DocStringExtensions v0.8.5
  [5b8099bc] DomainSets v0.5.7
  [7c1d4256] DynamicPolynomials v0.3.21
  [da5c29d0] EllipsisNotation v1.1.0
  [7da242da] Enzyme v0.7.0
  [d4d017d3] ExponentialUtilities v1.10.0
  [e2ba6199] ExprTools v0.1.6
  [c87230d0] FFMPEG v0.4.1
  [7a1cc6ca] FFTW v1.4.5
  [7034ab61] FastBroadcast v0.1.8
  [9aa1b823] FastClosures v0.3.2
  [1a297f60] FillArrays v0.12.6
  [6a86dc24] FiniteDiff v2.8.1
  [53c48c17] FixedPointNumbers v0.8.4
  [587475ba] Flux v0.12.7
  [59287772] Formatting v0.4.2
  [f6369f11] ForwardDiff v0.10.20
  [069b7b12] FunctionWrappers v1.1.2
  [d9f16b24] Functors v0.2.5
  [0c68f7d7] GPUArrays v8.1.1
  [61eb1bfa] GPUCompiler v0.12.9
  [28b8d3ca] GR v0.59.0
  [a75be94c] GalacticOptim v2.0.3
  [5c1252a2] GeometryBasics v0.4.1
  [af5da776] GlobalSensitivity v1.2.1
  [42e2da0e] Grisu v1.0.2
  [cd3eb016] HTTP v0.9.16
  [3e5b6fbb] HostCPUFeatures v0.1.4
  [0e44f5e4] Hwloc v2.0.0
  [7869d1d1] IRTools v0.4.3
  [615f187c] IfElse v0.1.0
  [d25df0c9] Inflate v0.1.2
  [83e8ac13] IniFile v0.5.0
  [a98d9a8b] Interpolations v0.13.4
  [8197267c] IntervalSets v0.5.3
  [92d709cd] IrrationalConstants v0.1.0
  [c8e1da08] IterTools v1.3.0
  [42fd0dbc] IterativeSolvers v0.9.1
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.3.0
  [682c06a0] JSON v0.21.2
  [98e50ef6] JuliaFormatter v0.16.2
  [e5e0dc1b] Juno v0.8.4
  [5ab0869b] KernelDensity v0.6.3
  [929cbde3] LLVM v4.6.0
  [b964fa9f] LaTeXStrings v1.2.1
  [2ee39098] LabelledArrays v1.6.5
  [23fbe1c1] Latexify v0.15.6
  [a5e1c1ea] LatinHypercubeSampling v1.8.0
  [73f95e8e] LatticeRules v0.0.1
  [10f19ff3] LayoutPointers v0.1.3
  [1d6d02ad] LeftChildRightSiblingTrees v0.1.2
  [093fc24a] LightGraphs v1.3.5
  [d3d80556] LineSearches v7.1.1
  [2ab3a3ac] LogExpFunctions v0.3.3
  [e6f89c97] LoggingExtras v0.4.7
  [bdcacae8] LoopVectorization v0.12.82
  [1914dd2f] MacroTools v0.5.8
  [d125e4d3] ManualMemory v0.1.6
  [739be429] MbedTLS v1.0.3
  [442fdcdd] Measures v0.3.1
  [e89f7d12] Media v0.5.0
  [e1d29d7a] Missings v1.0.2
  [961ee093] ModelingToolkit v6.5.2
  [46d2c3a1] MuladdMacro v0.2.2
  [f9640e96] MultiScaleArrays v1.8.1
  [102ac46a] MultivariatePolynomials v0.3.18
  [d8a4904e] MutableArithmetics v0.2.20
  [d41bc354] NLSolversBase v7.8.1
  [2774e3e8] NLsolve v4.5.1
  [872c559c] NNlib v0.7.29
  [a00861dc] NNlibCUDA v0.1.9
  [77ba4419] NaNMath v0.3.5
  [8913a72c] NonlinearSolve v0.3.11
  [d8793406] ObjectFile v0.3.7
  [6fe1bfb0] OffsetArrays v1.10.7
  [429524aa] Optim v1.4.1
  [bac558e1] OrderedCollections v1.4.1
  [1dea7af3] OrdinaryDiffEq v5.64.0
  [90014a1f] PDMats v0.11.1
  [65888b18] ParameterizedFunctions v5.12.1
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.0.5
  [ccf2f8ad] PlotThemes v2.0.1
  [995b91a9] PlotUtils v1.0.15
  [91a5bcdd] Plots v1.22.3
  [e409e4f3] PoissonRandom v0.4.0
  [f517fe37] Polyester v0.5.3
  [1d0040c9] PolyesterWeave v0.1.0
  [85a6dd25] PositiveFactorizations v0.2.4
  [d236fae5] PreallocationTools v0.1.1
  [21216c6a] Preferences v1.2.2
  [33c8b6b6] ProgressLogging v0.1.4
  [92933f4c] ProgressMeter v1.7.1
  [1fd47b50] QuadGK v2.4.2
  [8a4e6c94] QuasiMonteCarlo v0.2.3
  [74087812] Random123 v1.4.2
  [e6cf234a] RandomNumbers v1.4.0
  [c84ed2f1] Ratios v0.4.2
  [3cdcf5f2] RecipesBase v1.1.2
  [01d81517] RecipesPipeline v0.4.1
  [731186ca] RecursiveArrayTools v2.19.1
  [f2c3362d] RecursiveFactorization v0.2.4
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.1.3
  [ae5879a3] ResettableStacks v1.1.1
  [37e2e3b7] ReverseDiff v1.9.0
  [79098fc4] Rmath v0.7.0
  [7e49a35a] RuntimeGeneratedFunctions v0.5.3
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.27
  [1bc83da4] SafeTestsets v0.0.1
  [0bca4576] SciMLBase v1.19.0
  [6c6a2e73] Scratch v1.1.0
  [efcf1570] Setfield v0.7.1
  [992d4aef] Showoff v1.0.3
  [699a6c99] SimpleTraits v0.9.4
  [ed01d8cd] Sobol v1.5.0
  [a2af1166] SortingAlgorithms v1.0.1
  [47a9eef4] SparseDiffTools v1.16.5
  [276daf66] SpecialFunctions v1.7.0
  [860ef19b] StableRNGs v1.0.0
  [aedffcd0] Static v0.3.3
  [90137ffa] StaticArrays v1.2.13
  [82ae8749] StatsAPI v1.0.0
  [2913bbd2] StatsBase v0.33.10
  [4c63d2b9] StatsFuns v0.9.12
  [9672c7b4] SteadyStateDiffEq v1.6.5
  [789caeaf] StochasticDiffEq v6.37.2
  [7792a7ef] StrideArraysCore v0.2.4
  [09ab397b] StructArrays v0.6.3
  [53d494c1] StructIO v0.3.0
  [c3572dad] Sundials v4.6.0
  [d1185830] SymbolicUtils v0.16.0
  [0c5d862f] Symbolics v3.4.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.6.0
  [8ea1fca8] TermInterface v0.1.8
  [5d786b92] TerminalLoggers v0.1.4
  [8290d209] ThreadingUtilities v0.4.6
  [a759f4b9] TimerOutputs v0.5.13
  [0796e94c] Tokenize v0.5.21
  [9f7883ad] Tracker v0.2.16
  [3bb67fe8] TranscodingStreams v0.9.6
  [592b5752] Trapz v2.0.3
  [a2a6695c] TreeViews v0.3.0
  [d5829a12] TriangularSolve v0.1.6
  [5c2747f8] URIs v1.3.0
  [3a884ed6] UnPack v1.0.2
  [1986cc42] Unitful v1.9.0
  [3d5dd08c] VectorizationBase v0.21.13
  [19fa3120] VertexSafeGraphs v0.1.2
  [efce3f68] WoodburyMatrices v0.5.3
  [a5390f91] ZipFile v0.9.4
  [e88e6eb3] Zygote v0.6.25
  [700de1a5] ZygoteRules v0.2.2
  [6e34b625] Bzip2_jll v1.0.8+0
  [83423d85] Cairo_jll v1.16.1+0
  [5ae413db] EarCut_jll v2.2.3+0
  [7cc45869] Enzyme_jll v0.0.19+0
  [2e619515] Expat_jll v2.2.10+0
  [b22a6f82] FFMPEG_jll v4.4.0+0
  [f5851436] FFTW_jll v3.3.10+0
  [a3f928ae] Fontconfig_jll v2.13.93+0
  [d7e528f0] FreeType2_jll v2.10.4+0
  [559328eb] FriBidi_jll v1.0.10+0
  [0656b61e] GLFW_jll v3.3.5+0
  [d2c73de3] GR_jll v0.59.0+0
  [78b55507] Gettext_jll v0.21.0+0
  [7746bdde] Glib_jll v2.68.3+0
  [3b182d85] Graphite2_jll v1.3.14+0
  [2e76f6c2] HarfBuzz_jll v2.8.1+0
  [e33a78d0] Hwloc_jll v2.5.0+0
  [1d5cc7b8] IntelOpenMP_jll v2018.0.3+2
  [aacddb02] JpegTurbo_jll v2.1.0+0
  [c1c5ebd0] LAME_jll v3.100.1+0
  [dad2f222] LLVMExtra_jll v0.0.11+0
  [dd4b983a] LZO_jll v2.10.1+0
  [e9f186c6] Libffi_jll v3.2.2+0
  [d4300ac3] Libgcrypt_jll v1.8.7+0
  [7e76a0d4] Libglvnd_jll v1.3.0+3
  [7add5ba3] Libgpg_error_jll v1.42.0+0
  [94ce4f54] Libiconv_jll v1.16.1+1
  [4b2f31a3] Libmount_jll v2.35.0+0
  [89763e89] Libtiff_jll v4.3.0+0
  [38a345b3] Libuuid_jll v2.36.0+0
  [856f044c] MKL_jll v2021.1.1+2
  [e7412a2a] Ogg_jll v1.3.5+0
  [458c3c95] OpenSSL_jll v1.1.10+0
  [efe28fd5] OpenSpecFun_jll v0.5.5+0
  [91d4177d] Opus_jll v1.3.2+0
  [2f80f16e] PCRE_jll v8.44.0+0
  [30392449] Pixman_jll v0.40.1+0
  [ea2cea3b] Qt5Base_jll v5.15.3+0
  [f50d1b31] Rmath_jll v0.3.0+0
  [fb77eaff] Sundials_jll v5.2.0+1
  [a2964d1f] Wayland_jll v1.19.0+0
  [2381bf8a] Wayland_protocols_jll v1.18.0+4
  [02c8fc9c] XML2_jll v2.9.12+0
  [aed1982a] XSLT_jll v1.1.34+0
  [4f6342f7] Xorg_libX11_jll v1.6.9+4
  [0c0b7dd1] Xorg_libXau_jll v1.0.9+4
  [935fb764] Xorg_libXcursor_jll v1.2.0+4
  [a3789734] Xorg_libXdmcp_jll v1.1.3+4
  [1082639a] Xorg_libXext_jll v1.3.4+4
  [d091e8ba] Xorg_libXfixes_jll v5.0.3+4
  [a51aa0fd] Xorg_libXi_jll v1.7.10+4
  [d1454406] Xorg_libXinerama_jll v1.1.4+4
  [ec84b674] Xorg_libXrandr_jll v1.5.2+4
  [ea2f1a96] Xorg_libXrender_jll v0.9.10+4
  [14d82f49] Xorg_libpthread_stubs_jll v0.1.0+3
  [c7cfdc94] Xorg_libxcb_jll v1.13.0+3
  [cc61e674] Xorg_libxkbfile_jll v1.1.0+4
  [12413925] Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] Xorg_xcb_util_jll v0.4.0+1
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] Xorg_xkbcomp_jll v1.4.2+4
  [33bec58e] Xorg_xkeyboard_config_jll v2.27.0+4
  [c5fb5394] Xorg_xtrans_jll v1.4.0+3
  [3161d3a3] Zstd_jll v1.5.0+0
  [0ac62f75] libass_jll v0.15.1+0
  [f638f0a6] libfdk_aac_jll v2.0.2+0
  [b53b4c65] libpng_jll v1.6.38+0
  [f27f6e37] libvorbis_jll v1.3.7+0
  [1270edf5] x264_jll v2021.5.5+0
  [dfaa095f] x265_jll v3.5.0+0
  [d8fb68d0] xkbcommon_jll v0.9.1+5
  [0dad84c5] ArgTools
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8bb1440f] DelimitedFiles
  [8ba89e20] Distributed
  [f43a241f] Downloads
  [9fa8497b] Future
  [b77e0a4c] InteractiveUtils
  [4af54fe1] LazyArtifacts
  [b27032c2] LibCURL
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions
  [44cfe95a] Pkg
  [de0858da] Printf
  [9abbd945] Profile
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays
  [10745b16] Statistics
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML
  [a4e569a6] Tar
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll
  [deac9b47] LibCURL_jll
  [29816b5a] LibSSH2_jll
  [c8ffd9c3] MbedTLS_jll
  [14a3606d] MozillaCACerts_jll
  [4536629a] OpenBLAS_jll
  [05823500] OpenLibm_jll
  [bea87d4a] SuiteSparse_jll
  [83775a58] Zlib_jll
  [8e850ede] nghttp2_jll
  [3f19e933] p7zip_jll

Closing since resolved.