SciML / DifferentialEquations.jl

Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equations (SDEs), delay differential equations (DDEs), differential-algebraic equations (DAEs), and more in Julia.
https://docs.sciml.ai/DiffEqDocs/stable/
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I/O: Example of interface to `IterableTables` errors when trying to predefine column names #1020

Open tomdstone opened 9 months ago

tomdstone commented 9 months ago

Describe the bug 🐞

The example on https://docs.sciml.ai/DiffEqDocs/stable/features/io/ showing how to provide column names to DataFrame(::ODESolution) does not work, it errors when you provide either symbols or strings to the syms keyword, both cases it gives a method error on the getname function.

Expected behavior The column names are [:a, :b, :c, :d]

Minimal Reproducible Example 👇

This is the example on the docs, I was also able to reproduce with my own toy example

using OrdinaryDiffEq, DataFrames
f_2dlinear = (du, u, p, t) -> du .= 1.01u;

f = ODEFunction(f_2dlinear, syms = [:a, :b, :c, :d])
prob = ODEProblem(f, rand(2, 2), (0.0, 1.0));
sol = solve(prob, Euler(); dt = 1 // 2^(4));
df = DataFrame(sol)

Error & Stacktrace ⚠️

ERROR: MethodError: no method matching getname(::Symbol)
Stacktrace:
 [1] (::SciMLBase.var"#611#614"{Vector{Symbol}})(i::Int64)
   @ SciMLBase ./essentials.jl:0
 [2] iterate(::Base.Generator{UnitRange{Int64}, SciMLBase.var"#611#614"{Vector{Symbol}}})
   @ Base ./generator.jl:47
 [3] rows
   @ ~/.julia/packages/SciMLBase/Dwomw/src/tabletraits.jl:31 [inlined]
 [4] columns
   @ ~/.julia/packages/SciMLBase/Dwomw/src/tabletraits.jl:2 [inlined]
 [5] DataFrame(x::ODESolution{…}; copycols::Nothing)
   @ DataFrames ~/.julia/packages/DataFrames/58MUJ/src/other/tables.jl:57
 [6] DataFrame(x::ODESolution{…})
   @ DataFrames ~/.julia/packages/DataFrames/58MUJ/src/other/tables.jl:48
 [7] top-level scope
   @ ~/Documents/pkpd_modeling/bug_report.jl:19
Some type information was truncated. Use `show(err)` to see complete types.

Environment (please complete the following information):

Status `~/.julia/environments/v1.10/Project.toml`
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Commit 7790d6f0641 (2024-02-13 20:41 UTC)
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ChrisRackauckas commented 9 months ago

@AayushSabharwal I think this broke with the SII changes.