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SciML / DifferentialEquations.jl

Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equations (SDEs), delay differential equations (DDEs), differential-algebraic equations (DAEs), and more in Julia.
https://docs.sciml.ai/DiffEqDocs/stable/
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Memory leak during auto-algorithm selection with `EnsembleProblem` #1044

Open MasonProtter opened 3 months ago

MasonProtter commented 3 months ago

Describe the bug 🐞

When running a certain SDE in an EnsembleProblem, I see monotonically growing memory usage until my computer eventually kills julia.

This does not occur if I specify a specific solving algorithm

Minimal Reproducible Example 👇

using DifferentialEquations

let
    function f!(du, u, p, t)
        θ1 = u[1]
        θ2 = u[2]
        ω1 = p[1]
        ω2 = p[3]
        jcn1 = sin(θ2-θ1)
        jcn2 = sin(θ1-θ2)

        du[1] = ω1 + jcn1
        du[2] = ω2 + jcn2
    end
    function g!(du, u, p, t)
        ζ1 = p[2]
        ζ2 = p[4]
        du[1] = ζ1
        du[2] = ζ2
    end
    ω1 = 250.0
    ω2 = 250.0
    ζ1 = 6.0
    ζ2 = 6.0
    u0 = [0.0, 0.0]
    p = [ω1, ζ1, ω2, ζ2]
    prob = SDEProblem(f!, g!, u0, (0.0, 2.0), p)
    eprob = EnsembleProblem(prob)
    solve(eprob, EnsembleSerial(); trajectories=50_000)
end

Environment (please complete the following information):

(jl_lXoHOR) pkg> st
Status `/tmp/jl_lXoHOR/Project.toml`
  [0c46a032] DifferentialEquations v7.13.0
julia> using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
Status `/tmp/jl_lXoHOR/Manifest.toml`
  [47edcb42] ADTypes v1.6.2
  [7d9f7c33] Accessors v0.1.37
  [79e6a3ab] Adapt v4.0.4
  [66dad0bd] AliasTables v1.1.3
  [ec485272] ArnoldiMethod v0.4.0
  [4fba245c] ArrayInterface v7.15.0
  [4c555306] ArrayLayouts v1.10.2
  [aae01518] BandedMatrices v1.7.2
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [764a87c0] BoundaryValueDiffEq v5.9.0
  [fa961155] CEnum v0.5.0
  [2a0fbf3d] CPUSummary v0.2.6
  [49dc2e85] Calculus v0.5.1
  [d360d2e6] ChainRulesCore v1.24.0
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [38540f10] CommonSolve v0.2.4
  [bbf7d656] CommonSubexpressions v0.3.0
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.15.0
  [a33af91c] CompositionsBase v0.1.2
  [2569d6c7] ConcreteStructs v0.2.3
  [187b0558] ConstructionBase v1.5.6
  [adafc99b] CpuId v0.3.1
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.20
  [e2d170a0] DataValueInterfaces v1.0.0
  [bcd4f6db] DelayDiffEq v5.47.4
  [2b5f629d] DiffEqBase v6.152.2
  [459566f4] DiffEqCallbacks v3.7.0
  [77a26b50] DiffEqNoiseProcess v5.22.0
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [0c46a032] DifferentialEquations v7.13.0
  [a0c0ee7d] DifferentiationInterface v0.5.11
  [b4f34e82] Distances v0.10.11
  [31c24e10] Distributions v0.25.109
  [ffbed154] DocStringExtensions v0.9.3
  [fa6b7ba4] DualNumbers v0.6.8
  [4e289a0a] EnumX v1.0.4
  [f151be2c] EnzymeCore v0.7.7
  [d4d017d3] ExponentialUtilities v1.26.1
  [e2ba6199] ExprTools v0.1.10
⌅ [6b7a57c9] Expronicon v0.8.5
  [9d29842c] FastAlmostBandedMatrices v0.1.3
  [7034ab61] FastBroadcast v0.3.5
  [9aa1b823] FastClosures v0.3.2
  [29a986be] FastLapackInterface v2.0.4
  [1a297f60] FillArrays v1.11.0
  [6a86dc24] FiniteDiff v2.23.1
  [f6369f11] ForwardDiff v0.10.36
  [069b7b12] FunctionWrappers v1.1.3
  [77dc65aa] FunctionWrappersWrappers v0.1.3
  [d9f16b24] Functors v0.4.12
  [46192b85] GPUArraysCore v0.1.6
  [c145ed77] GenericSchur v0.5.4
  [86223c79] Graphs v1.11.2
  [3e5b6fbb] HostCPUFeatures v0.1.17
  [34004b35] HypergeometricFunctions v0.3.23
  [615f187c] IfElse v0.1.1
  [d25df0c9] Inflate v0.1.5
  [3587e190] InverseFunctions v0.1.15
  [92d709cd] IrrationalConstants v0.2.2
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.5.0
  [ccbc3e58] JumpProcesses v9.12.0
  [ef3ab10e] KLU v0.6.0
  [ba0b0d4f] Krylov v0.9.6
  [10f19ff3] LayoutPointers v0.1.17
  [5078a376] LazyArrays v2.1.9
  [2d8b4e74] LevyArea v1.0.0
  [d3d80556] LineSearches v7.2.0
  [7ed4a6bd] LinearSolve v2.31.2
  [2ab3a3ac] LogExpFunctions v0.3.28
  [bdcacae8] LoopVectorization v0.12.171
  [d8e11817] MLStyle v0.4.17
  [1914dd2f] MacroTools v0.5.13
  [d125e4d3] ManualMemory v0.1.8
  [a3b82374] MatrixFactorizations v3.0.0
  [bb5d69b7] MaybeInplace v0.1.3
  [e1d29d7a] Missings v1.2.0
  [46d2c3a1] MuladdMacro v0.2.4
  [d41bc354] NLSolversBase v7.8.3
  [2774e3e8] NLsolve v4.5.1
  [77ba4419] NaNMath v1.0.2
  [8913a72c] NonlinearSolve v3.13.1
  [6fe1bfb0] OffsetArrays v1.14.1
  [429524aa] Optim v1.9.4
  [bac558e1] OrderedCollections v1.6.3
  [1dea7af3] OrdinaryDiffEq v6.87.0
  [90014a1f] PDMats v0.11.31
  [65ce6f38] PackageExtensionCompat v1.0.2
  [d96e819e] Parameters v0.12.3
  [e409e4f3] PoissonRandom v0.4.4
  [f517fe37] Polyester v0.7.15
  [1d0040c9] PolyesterWeave v0.2.2
  [85a6dd25] PositiveFactorizations v0.2.4
  [d236fae5] PreallocationTools v0.4.23
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [43287f4e] PtrArrays v1.2.0
  [1fd47b50] QuadGK v2.10.1
  [74087812] Random123 v1.7.0
  [e6cf234a] RandomNumbers v1.5.3
  [3cdcf5f2] RecipesBase v1.3.4
  [731186ca] RecursiveArrayTools v3.26.0
  [f2c3362d] RecursiveFactorization v0.2.23
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.0
  [ae5879a3] ResettableStacks v1.1.1
  [79098fc4] Rmath v0.7.1
  [7e49a35a] RuntimeGeneratedFunctions v0.5.13
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
  [0bca4576] SciMLBase v2.48.1
  [c0aeaf25] SciMLOperators v0.3.8
  [53ae85a6] SciMLStructures v1.4.2
  [efcf1570] Setfield v1.1.1
  [727e6d20] SimpleNonlinearSolve v1.11.0
  [699a6c99] SimpleTraits v0.9.4
  [ce78b400] SimpleUnPack v1.1.0
  [a2af1166] SortingAlgorithms v1.2.1
  [47a9eef4] SparseDiffTools v2.19.0
  [0a514795] SparseMatrixColorings v0.3.6
  [e56a9233] Sparspak v0.3.9
  [276daf66] SpecialFunctions v2.4.0
  [aedffcd0] Static v1.1.1
  [0d7ed370] StaticArrayInterface v1.5.1
  [90137ffa] StaticArrays v1.9.7
  [1e83bf80] StaticArraysCore v1.4.3
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.3
  [4c63d2b9] StatsFuns v1.3.1
  [9672c7b4] SteadyStateDiffEq v2.3.0
  [789caeaf] StochasticDiffEq v6.67.0
  [7792a7ef] StrideArraysCore v0.5.7
  [c3572dad] Sundials v4.24.0
  [2efcf032] SymbolicIndexingInterface v0.3.27
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [8290d209] ThreadingUtilities v0.5.2
  [a759f4b9] TimerOutputs v0.5.24
  [d5829a12] TriangularSolve v0.2.1
  [410a4b4d] Tricks v0.1.9
  [781d530d] TruncatedStacktraces v1.4.0
  [3a884ed6] UnPack v1.0.2
  [3d5dd08c] VectorizationBase v0.21.70
  [19fa3120] VertexSafeGraphs v0.2.0
  [1d5cc7b8] IntelOpenMP_jll v2024.2.0+0
  [856f044c] MKL_jll v2024.2.0+0
  [efe28fd5] OpenSpecFun_jll v0.5.5+0
  [f50d1b31] Rmath_jll v0.4.2+0
⌅ [fb77eaff] Sundials_jll v5.2.2+0
  [1317d2d5] oneTBB_jll v2021.12.0+0
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8ba89e20] Distributed
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [9fa8497b] Future
  [b77e0a4c] InteractiveUtils
  [4af54fe1] LazyArtifacts
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.10.0
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays v1.10.0
  [10745b16] Statistics v1.10.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.4.0+0
  [e37daf67] LibGit2_jll v1.6.4+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.2+1
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [4536629a] OpenBLAS_jll v0.3.23+4
  [05823500] OpenLibm_jll v0.8.1+2
  [bea87d4a] SuiteSparse_jll v7.2.1+1
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.8.0+1
  [8e850ede] nghttp2_jll v1.52.0+1
  [3f19e933] p7zip_jll v17.4.0+2

Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
julia> versioninfo()
Julia Version 1.10.4
Commit 48d4fd48430 (2024-06-04 10:41 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: 12 × AMD Ryzen 5 5600X 6-Core Processor
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 6 default, 0 interactive, 3 GC (on 12 virtual cores)
Environment:
  JULIA_NUM_THREADS = 6

(I've also tested on v1.11-rc2 and found the same result)

ChrisRackauckas commented 3 months ago

This should've been fixed by the removal of the gensym here:

https://github.com/SciML/StochasticDiffEq.jl/commit/5fb37216efd759df26df89a00e6992a0e440b4d9

Are there any other generated symbols? Maybe audit the ensemble code?

ChrisRackauckas commented 3 months ago

Looks like it could exist in StochasticDelayDiffEq, but you don't have delays in your case

https://github.com/SciML/StochasticDelayDiffEq.jl/blob/master/src/solve.jl#L61

MasonProtter commented 3 months ago

Ah interesting. I wonder if it has to do with EnsembleProblem?

ChrisRackauckas commented 3 months ago

Maybe. That code is easy to audit though: https://github.com/SciML/SciMLBase.jl/blob/master/src/ensemble/basic_ensemble_solve.jl . I don't see anything immediate that would cause such a behavior. Maybe @topolarity or @gbaraldi have some tool to point us in some direction.