error using "DifferentialEquations.jl" in JuliaPro 1.0.2, win 10

[LianhaoYin]

There is no pblem to install using "Pkg.add("DifferentialEquations")". However, errors occurs when "using DifferentialEquations" [ Info: Precompiling DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] ┌ Warning: On Windows, creating file symlinks requires Administrator privileges └ @ Base.Filesystem file.jl:789 ┌ Warning: On Windows, creating file symlinks requires Administrator privileges └ @ Base.Filesystem file.jl:789 ┌ Warning: On Windows, creating file symlinks requires Administrator privileges └ @ Base.Filesystem file.jl:789 ERROR: LoadError: LoadError: UndefVarError: is_windows not defined Stacktrace: [1] top-level scope at C:\Users\Lianhao Yin.juliapro\packages\SymEngine\sh7Yz\deps\deps.jl:3 [2] include at .\boot.jl:317 [inlined] [3] include_relative(::Module, ::String) at .\loading.jl:1044 [4] include at .\sysimg.jl:29 [inlined] [5] include(::String) at C:\Users\Lianhao Yin.juliapro\packages\SymEngine\sh7Yz\src\SymEngine.jl:3 [6] top-level scope at none:0 [7] include at .\boot.jl:317 [inlined] [8] include_relative(::Module, ::String) at .\loading.jl:1044 [9] include(::Module, ::String) at .\sysimg.jl:29 [10] top-level scope at none:2 [11] eval at .\boot.jl:319 [inlined] [12] eval(::Expr) at .\client.jl:393 [13] top-level scope at .\none:3 in expression starting at C:\Users\Lianhao Yin.juliapro\packages\SymEngine\sh7Yz\deps\deps.jl:2 in expression starting at C:\Users\Lianhao Yin.juliapro\packages\SymEngine\sh7Yz\src\SymEngine.jl:26 ERROR: LoadError: Failed to precompile SymEngine [123dc426-2d89-5057-bbad-38513e3affd8] to C:\Users\Lianhao Yin.juliapro\compiled\v1.0\SymEngine\uZhcI.ji. Stacktrace: [1] error(::String) at .\error.jl:33 [2] macro expansion at .\logging.jl:311 [inlined] [3] compilecache(::Base.PkgId, ::String) at .\loading.jl:1190 [4] macro expansion at .\logging.jl:309 [inlined] [5] _require(::Base.PkgId) at .\loading.jl:947 [6] require(::Base.PkgId) at .\loading.jl:858 [7] macro expansion at .\logging.jl:309 [inlined] [8] require(::Module, ::Symbol) at .\loading.jl:840 [9] include at .\boot.jl:317 [inlined] [10] include_relative(::Module, ::String) at .\loading.jl:1044 [11] include(::Module, ::String) at .\sysimg.jl:29 [12] top-level scope at none:2 [13] eval at .\boot.jl:319 [inlined] [14] eval(::Expr) at .\client.jl:393 [15] top-level scope at .\none:3 in expression starting at C:\Users\Lianhao Yin.juliapro\packages\ParameterizedFunctions\ozDxQ\src\ParameterizedFunctions.jl:11 ERROR: LoadError: Failed to precompile ParameterizedFunctions [65888b18-ceab-5e60-b2b9-181511a3b968] to C:\Users\Lianhao Yin.juliapro\compiled\v1.0\ParameterizedFunctions\OKjOc.ji. Stacktrace: [1] error(::String) at .\error.jl:33 [2] macro expansion at .\logging.jl:311 [inlined] [3] compilecache(::Base.PkgId, ::String) at .\loading.jl:1190 [4] macro expansion at .\logging.jl:309 [inlined] [5] _require(::Base.PkgId) at .\loading.jl:947 [6] require(::Base.PkgId) at .\loading.jl:858 [7] macro expansion at .\logging.jl:309 [inlined] [8] require(::Module, ::Symbol) at .\loading.jl:840 [9] include at .\boot.jl:317 [inlined] [10] include_relative(::Module, ::String) at .\loading.jl:1044 [11] include(::Module, ::String) at .\sysimg.jl:29 [12] top-level scope at none:2 [13] eval at .\boot.jl:319 [inlined] [14] eval(::Expr) at .\client.jl:393 [15] top-level scope at .\none:3 in expression starting at C:\Users\Lianhao Yin.juliapro\packages\DifferentialEquations\88DSk\src\DifferentialEquations.jl:18 ERROR: Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to C:\Users\Lianhao Yin.juliapro\compiled\v1.0\DifferentialEquations\UQdwS.ji. Stacktrace: [1] macro expansion at .\logging.jl:311 [inlined] [2] compilecache(::Base.PkgId, ::String) at .\loading.jl:1190 [3] macro expansion at .\logging.jl:309 [inlined] [4] _require(::Base.PkgId) at .\loading.jl:947 [5] require(::Base.PkgId) at .\loading.jl:858 [6] macro expansion at .\logging.jl:309 [inlined] [7] require(::Module, ::Symbol) at .\loading.jl:840

[ChrisRackauckas]

Looks like an error with building SymEngine, but I thought they fixed that. @isuruf ? Could you try doing ]build SymEngine again?

[roc-coder]

Same question (JuliaPro) pkg> build DifferentialEquations Building SpecialFunctions → C:\Users\82416\.juliapro\packages\SpecialFunctions\KvXoO\deps\build. log Building DiffEqBase ──────→ C:\Users\82416\.juliapro\packages\DiffEqBase\Rj7cy\deps\build.log Building RandomNumbers ───→ C:\Users\82416\.juliapro\packages\RandomNumbers\cr9ta\deps\build.log ┌ Error: Error building RandomNumbers: │ fatal: error thrown and no exception handler available. │ InitError(mod=:MbedTLS, error=MethodError(f=typeof(Base.Filesystem.joinpath)(), args=(nothing, ".. ", "..", "deps", "usr", "lib"), world=0x00000000000067f0)) │ rec_backtrace at /home/Administrator/buildbot/worker/package_win64/build/src\stackwalk.c:94 │ record_backtrace at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:246 │ jl_throw at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:577 │ jl_method_error_bare at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1616 │ jl_method_error at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1634 │ jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2161 │ init at C:\Users\julia\AppData\Local\Julia-1.0.2\share\julia\stdlib\v1.0\MbedTLS\src\MbedTLS.j l:61 │ jfptrinit14286 at C:\Users\82416\AppData\Local\JuliaPro-1.0.2.1\Julia-1.0.2\lib\julia\sys.dl l (unknown line) │ jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2184 │ jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1537 [inlined] │ jl_module_run_initializer at /home/Administrator/buildbot/worker/package_win64/build/src\toplevel. c:90 │ _julia_init at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buil dbot/worker/package_win64/build/src\init.c:813 │ julia_initthreading at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:302 │ wmain at /home/Administrator/buildbot/worker/package_win64/build/ui\repl.c:227 │ tmainCRTStartup at /usr/src/debug/mingw64-x86_64-runtime-5.0.3-1/crt\crtexe.c:329 │ mainCRTStartup at /usr/src/debug/mingw64-x86_64-runtime-5.0.3-1/crt\crtexe.c:212 │ BaseThreadInitThunk at C:\Windows\System32\KERNEL32.DLL (unknown line) │ RtlUserThreadStart at C:\Windows\SYSTEM32\ntdll.dll (unknown line) └ @ Pkg.Operations C:\Users\julia\AppData\Local\Julia-1.0.2\share\julia\stdlib\v1.0\Pkg\src\Operatio ns.jl:1119 Building Arpack ──────────→ C:\Users\82416\.juliapro\packages\Arpack\WP3ru\deps\build.log Building Rmath ───────────→ C:\Users\82416\.juliapro\packages\Rmath\Py9gH\deps\build.log Building SymEngine ───────→ C:\Users\82416\.juliapro\packages\SymEngine\sh7Yz\deps\build.log ┌ Error: Error building SymEngine: │ ┌ Warning: platform_key() is deprecated, use platform_key_abi() from now on │ │ caller = ip:0x0 │ └ @ Core :-1 │ [ Info: Found a valid dl path libgmp-10.dll while looking for libmpfr │ [ Info: Found a valid dl path libgmpxx-4.dll while looking for libmpfr │ [ Info: Found a valid dl path libmpc-3.dll while looking for libmpfr │ [ Info: Found a valid dl path libmpfr-6.dll while looking for libmpfr │ [ Info: C:\Users\82416.juliapro\packages\SymEngine\sh7Yz\deps\symengine-0.3\bin\libmpfr-6.dll mat ches our search criteria of libmpfr │ [ Info: Found a valid dl path libgmp-10.dll while looking for libsymengine │ [ Info: Found a valid dl path libgmpxx-4.dll while looking for libsymengine │ [ Info: Found a valid dl path libmpc-3.dll while looking for libsymengine │ [ Info: Found a valid dl path libmpfr-6.dll while looking for libsymengine │ [ Info: Found a valid dl path libsymengine.dll while looking for libsymengine │ [ Info: C:\Users\82416.juliapro\packages\SymEngine\sh7Yz\deps\symengine-0.3\bin\libsymengine.dll matches our search criteria of libsymengine │ [ Info: Found a valid dl path libgmp-10.dll while looking for libmpc │ [ Info: Found a valid dl path libgmpxx-4.dll while looking for libmpc │ [ Info: Found a valid dl path libmpc-3.dll while looking for libmpc │ [ Info: C:\Users\82416.juliapro\packages\SymEngine\sh7Yz\deps\symengine-0.3\bin\libmpc-3.dll matc hes our search criteria of libmpc │ [ Info: Found a valid dl path libgmp-10.dll while looking for libgmp │ [ Info: C:\Users\82416.juliapro\packages\SymEngine\sh7Yz\deps\symengine-0.3\bin\libgmp-10.dll mat ches our search criteria of libgmp │ ERROR: LoadError: SystemError: opening file C:\Users\82416.juliapro\packages\SymEngine\sh7Yz\deps \deps.jl: Permission denied │ Stacktrace: │ [1] #systemerror#39(::Nothing, ::Function, ::String, ::Bool) at .\error.jl:106 │ [2] systemerror at .\error.jl:106 [inlined] │ [3] #open#293(::Nothing, ::Nothing, ::Nothing, ::Bool, ::Nothing, ::Function, ::String) at .\iost ream.jl:283 │ [4] #open at .\none:0 [inlined] │ [5] open(::String, ::String) at .\iostream.jl:339 │ [6] #open#294(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::getfield(BinaryProvider, Symbol("##162#164")){Bool,String,Array{LibraryProduct,1},getfield(Binary Provider, Symbol("##161#163")),SubString{String}}, ::String, ::Vararg{String,N} where N) at .\iostre am.jl:367 │ [7] open at .\iostream.jl:367 [inlined] │ [8] #write_deps_file#160(::Bool, ::Function, ::String, ::Array{LibraryProduct,1}) at C:\Users\jul ia\AppData\Local\Julia-1.0.2\share\julia\stdlib\v1.0\BinaryProvider\src\Products.jl:413 │ [9] write_deps_file(::String, ::Array{LibraryProduct,1}) at C:\Users\julia\AppData\Local\Julia-1. 0.2\share\julia\stdlib\v1.0\BinaryProvider\src\Products.jl:395 │ [10] top-level scope at none:0 │ [11] include at .\boot.jl:317 [inlined] │ [12] include_relative(::Module, ::String) at .\loading.jl:1044 │ [13] include(::Module, ::String) at .\sysimg.jl:29 │ [14] include(::String) at .\client.jl:392 │ [15] top-level scope at none:0 │ in expression starting at C:\Users\82416.juliapro\packages\SymEngine\sh7Yz\deps\build.jl:41 └ @ Pkg.Operations C:\Users\julia\AppData\Local\Julia-1.0.2\share\julia\stdlib\v1.0\Pkg\src\Operatio ns.jl:1119 Building Sundials ────────→ C:\Users\82416\.juliapro\packages\Sundials\1a9iB\deps\build.log

[ChrisRackauckas]

Yup once again a SymEngine build error. We'll see what @isuruf says

[isuruf]

│ ERROR: LoadError: SystemError: opening file C:\Users\82416.juliapro\packages\SymEngine\sh7Yz\deps \deps.jl: Permission denied

I've no idea why this is? Did you run using Administrator mode before?

[roc-coder]

I used Administrator mode.

│ ERROR: LoadError: SystemError: opening file C:\Users\82416.juliapro\packages\SymEngine\sh7Yz\deps \deps.jl: Permission denied

I've no idea why this is? Did you run using Administrator mode before?

I used Administrator mode.

[isuruf]

Can you try deleting C:\Users\82416.juliapro\packages\SymEngine\sh7Yz\deps\deps.jl in administrator mode and run again?

[LianhaoYin]

Does not work actually. Same error report

[roc-coder]

I'm building DifferentialEquations in Administrator account now. It's very slow! when finishing it, I will try your suggestion.

(JuliaPro) pkg> build DifferentialEquations Building SpecialFunctions → C:\Users\Administrator\.juliapro\packages\SpecialFunctions\KvXoO\dep s\build.log Building DiffEqBase ──────→ C:\Users\Administrator\.juliapro\packages\DiffEqBase\Rj7cy\deps\buil d.log Building RandomNumbers ───→ C:\Users\Administrator\.juliapro\packages\RandomNumbers\cr9ta\deps\b uild.log ┌ Error: Error building RandomNumbers: │ fatal: error thrown and no exception handler available. │ InitError(mod=:MbedTLS, error=MethodError(f=typeof(Base.Filesystem.joinpath)(), args=(nothing, ".. ", "..", "deps", "usr", "lib"), world=0x00000000000067f0)) │ rec_backtrace at /home/Administrator/buildbot/worker/package_win64/build/src\stackwalk.c:94 │ record_backtrace at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:246 │ jl_throw at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:577 │ jl_method_error_bare at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1616 │ jl_method_error at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1634 │ jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2161 │ init at C:\Users\julia\AppData\Local\Julia-1.0.2\share\julia\stdlib\v1.0\MbedTLS\src\MbedTLS.j l:61 │ jfptrinit14286 at C:\JuliaPro-1.0.2.1\Julia-1.0.2\lib\julia\sys.dll (unknown line) │ jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2184 │ jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1537 [inlined] │ jl_module_run_initializer at /home/Administrator/buildbot/worker/package_win64/build/src\toplevel. c:90 │ _julia_init at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buil dbot/worker/package_win64/build/src\init.c:813 │ julia_initthreading at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:302 │ wmain at /home/Administrator/buildbot/worker/package_win64/build/ui\repl.c:227 │ tmainCRTStartup at /usr/src/debug/mingw64-x86_64-runtime-5.0.3-1/crt\crtexe.c:329 │ mainCRTStartup at /usr/src/debug/mingw64-x86_64-runtime-5.0.3-1/crt\crtexe.c:212 │ BaseThreadInitThunk at C:\Windows\System32\KERNEL32.DLL (unknown line) │ RtlUserThreadStart at C:\Windows\SYSTEM32\ntdll.dll (unknown line) └ @ Pkg.Operations C:\Users\julia\AppData\Local\Julia-1.0.2\share\julia\stdlib\v1.0\Pkg\src\Operatio ns.jl:1119 Building Arpack ──────────→ C:\Users\Administrator\.juliapro\packages\Arpack\WP3ru\deps\build.lo g Building Rmath ───────────→ C:\Users\Administrator\.juliapro\packages\Rmath\Py9gH\deps\build.log Building SymEngine ───────→ C:\Users\Administrator\.juliapro\packages\SymEngine\sh7Yz\deps\build .log ┌ Error: Error building SymEngine: │ ┌ Warning: platform_key() is deprecated, use platform_key_abi() from now on │ │ caller = ip:0x0 │ └ @ Core :-1 │ ERROR: LoadError: LoadError: Could not list contents of tarball C:\Users\Administrator.juliapro\p ackages\SymEngine\sh7Yz\deps\symengine-0.3\downloads\MPFR.v4.0.1.x86_64-w64-mingw32.tar.gz │ Stacktrace: │ [1] error(::String) at .\error.jl:33 │ [2] #list_tarball_files#147(::Bool, ::Function, ::String) at C:\Users\julia\AppData\Local\Julia-1 .0.2\share\julia\stdlib\v1.0\BinaryProvider\src\Prefix.jl:468 │ [3] list_tarball_files at C:\Users\julia\AppData\Local\Julia-1.0.2\share\julia\stdlib\v1.0\Binary Provider\src\Prefix.jl:457 [inlined] │ [4] macro expansion at .\logging.jl:307 [inlined] │ [5] #install#137(::Prefix, ::String, ::Bool, ::Bool, ::Bool, ::Function, ::String, ::String) at C :\Users\julia\AppData\Local\Julia-1.0.2\share\julia\stdlib\v1.0\BinaryProvider\src\Prefix.jl:319 │ [6] (::getfield(BinaryProvider, Symbol("#kw##install")))(::NamedTuple{(:prefix, :force, :verbose) ,Tuple{Prefix,Bool,Bool}}, ::typeof(install), ::String, ::String) at .\none:0 │ [7] top-level scope at string:36 │ [8] include_string(::Module, ::String, ::String) at .\loading.jl:1008 │ [9] include_string(::Module, ::String) at .\loading.jl:1012 │ [10] top-level scope at C:\Users\Administrator.juliapro\packages\SymEngine\sh7Yz\deps\build.jl:3 1 │ [11] include at .\boot.jl:317 [inlined] │ [12] include_relative(::Module, ::String) at .\loading.jl:1044 │ [13] include(::Module, ::String) at .\sysimg.jl:29 │ [14] include(::String) at .\client.jl:392 │ [15] top-level scope at none:0 │ in expression starting at string:32 │ in expression starting at C:\Users\Administrator.juliapro\packages\SymEngine\sh7Yz\deps\build.jl: 21 │ ERROR: C:\Users\Administrator.juliapro\packages\SymEngine\sh7Yz\deps\symengine-0.3\downloads\MPFR .v4.0.1.x86_64-w64-mingw32.tar.gz │ Can not open the file as archive │ │ ��һ���������ʹ�ô��ļ����޷����ʡ� │ │ 7-Zip [64] 16.04 : Copyright (c) 1999-2016 Igor Pavlov : 2016-10-04 │ │ │ Listing archive: │ │ -- │ Path = │ Type = tar │ Code Page = UTF-8 │ │ Date Time Attr Size Compressed Name │ ------------------- ----- ------------ ------------ ------------------------ │ ------------------- ----- ------------ ------------ ------------------------ │ 0 0 files └ @ Pkg.Operations C:\Users\julia\AppData\Local\Julia-1.0.2\share\julia\stdlib\v1.0\Pkg\src\Operatio ns.jl:1119 Building Sundials ────────→ C:\Users\Administrator\.juliapro\packages\Sundials\1a9iB\deps\build. log

[roc-coder]

It is work. When deleting C:\Users\82416.juliapro\packages\SymEngine\sh7Yz\deps\deps.jl, error report as follow: (JuliaPro) pkg> build DifferentialEquations Building SpecialFunctions → C:\Users\82416\.juliapro\packages\SpecialFunctions\KvXoO\deps\build. log Building DiffEqBase ──────→ C:\Users\82416\.juliapro\packages\DiffEqBase\Rj7cy\deps\build.log Building RandomNumbers ───→ C:\Users\82416\.juliapro\packages\RandomNumbers\cr9ta\deps\build.log ┌ Error: Error building RandomNumbers: │ fatal: error thrown and no exception handler available. │ InitError(mod=:MbedTLS, error=MethodError(f=typeof(Base.Filesystem.joinpath)(), args=(nothing, ".. ", "..", "deps", "usr", "lib"), world=0x00000000000067f0)) │ rec_backtrace at /home/Administrator/buildbot/worker/package_win64/build/src\stackwalk.c:94 │ record_backtrace at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:246 │ jl_throw at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:577 │ jl_method_error_bare at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1616 │ jl_method_error at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1634 │ jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2161 │ init at C:\Users\julia\AppData\Local\Julia-1.0.2\share\julia\stdlib\v1.0\MbedTLS\src\MbedTLS.j l:61 │ jfptrinit14286 at C:\Users\82416\AppData\Local\JuliaPro-1.0.2.1\Julia-1.0.2\lib\julia\sys.dl l (unknown line) │ jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2184 │ jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1537[inlined] │ jl_module_run_initializer at /home/Administrator/buildbot/worker/package_win64/build/src\toplevel. c:90 │ _julia_init at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buil dbot/worker/package_win64/build/src\init.c:813 │ julia_initthreading at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:302 │ wmain at /home/Administrator/buildbot/worker/package_win64/build/ui\repl.c:227 │ tmainCRTStartup at /usr/src/debug/mingw64-x86_64-runtime-5.0.3-1/crt\crtexe.c:329 │ mainCRTStartup at /usr/src/debug/mingw64-x86_64-runtime-5.0.3-1/crt\crtexe.c:212 │ BaseThreadInitThunk at C:\Windows\System32\KERNEL32.DLL (unknown line) │ RtlUserThreadStart at C:\Windows\SYSTEM32\ntdll.dll (unknown line) └ @ Pkg.Operations C:\Users\julia\AppData\Local\Julia-1.0.2\share\julia\stdlib\v1.0\Pkg\src\Operatio ns.jl:1119 Building Arpack ──────────→ C:\Users\82416\.juliapro\packages\Arpack\WP3ru\deps\build.log Building Rmath ───────────→ C:\Users\82416\.juliapro\packages\Rmath\Py9gH\deps\build.log Building SymEngine ───────→ C:\Users\82416\.juliapro\packages\SymEngine\sh7Yz\deps\build.log Building Sundials ────────→ C:\Users\82416\.juliapro\packages\Sundials\1a9iB\deps\build.log

[ChrisRackauckas]

Yes, it looks like:

│ ERROR: C:\Users\Administrator.juliapro\packages\SymEngine\sh7Yz\deps\symengine-0.3\downloads\MPFR .v4.0.1.x86_64-w64-mingw32.tar.gz

was a download error.

[roc-coder]

There is no errors when I use Julia1.1.0. So, maybe it is a problem with juliapro or julia1.0.2?

[ChrisRackauckas]

I think the download just went through the second time.