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SciML / FiniteStateProjection.jl

Finite State Projection algorithms for chemical reaction networks
MIT License
18 stars 7 forks source link

package maintenance #13

Open isaacsas opened 9 months ago

isaacsas commented 9 months ago

@kaandocal would you consider putting this under SciML so we could get more people access to maintain it? You could still have full repo permissons, but having it in an org might help with keeping dependencies updated. Just a thought!

kaandocal commented 9 months ago

Sure, happy to do that - I've not been very up to date with some of the more recent changes to Catalyst and Symbolics, as you might have noticed...

isaacsas commented 9 months ago

No worries! I'm trying hard to keep Catalyst v13 stable and avoid any breaking changes for a while. It was a nice improvement I think and will ultimately allow full (spatial too!) model specification within DSL, but it was breaking. I can't control Symbolics, but the last breaking release had noticeable performance improvements, so I'd say it was worthwhile.

I'll ping you here once you have been added to SciML and can initiate the repo transfer.

isaacsas commented 9 months ago

I just sent you an invite to join SciML. Once you accept you can transfer this repo to the org. I'll make sure you still have full write permissions on it.

kaandocal commented 9 months ago

I appreciate the work on both packages. Unfortunately the invitation link has expired as I had other commitments for the past week or two - if you could please re-send it I will make sure to transfer the repo. Thanks and sorry for the bother!

isaacsas commented 8 months ago

@kaandocal I just sent you another invitation.

isaacsas commented 8 months ago

Sorry for the delay, I was traveling for a week and am still catching up myself on stuff...

kaandocal commented 8 months ago

No worries, the hold-up was on me. Done!

isaacsas commented 8 months ago

Yup, I see it is now working. Is there any reason not to make a new v.3 release with the updated Catalyst support? (i.e. are you aware that there are open issues?)

isaacsas commented 7 months ago

@kaandocal is it ok to make a release of the current version to get the Catalyst 13 support out there?

sallyseal commented 5 months ago

@kaandocal @isaacsas is FiniteStateProjection.jl compatible with Catalyst 13 now? I'm having an issue with using symbolic stoichiometry matrices. Thanks!

isaacsas commented 5 months ago

It looks like it never got a release for Catalyst 13, but I just started the process.

sallyseal commented 5 months ago

It looks like it never got a release for Catalyst 13, but I just started the process.

Thanks @isaacsas - will check back

kaandocal commented 5 months ago

@sallyseal The delay is my doing - I mistakenly assumed the updated version would be reflected in the registry automatically.

kaandocal commented 5 months ago

@sallyseal Please let me know if this works for you. Seems like not updating in time created a big mess...