SciML / JumpProcesses.jl

Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates and mix with differential equations and scientific machine learning (SciML)
https://docs.sciml.ai/JumpProcesses/stable/
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Move spatial tutorial from SciMLTutorials #277

Closed ChrisRackauckas closed 1 year ago

ChrisRackauckas commented 1 year ago

Now that we have package docs for all of the packages and doctests, it makes sense for the tutorials to be built as part of the testing process. It also keeps everything organized by package. Thus SciMLTutorials is getting cannibalized into separate package docs, and this is the one for JumpProcesses. I did a few updates (DiffEqJump, LightGraphs, links) so hopefully this is enough. I might need a little bit of help getting this one completed though, since there are a few I need to tend to.

ChrisRackauckas commented 1 year ago

@Vilin97 @isaacsas

isaacsas commented 1 year ago

I can finish this one off.

ChrisRackauckas commented 1 year ago

Thanks, I'll just close the tab then and move onto the next!

coveralls commented 1 year ago

Pull Request Test Coverage Report for Build 3664935807

Warning: This coverage report may be inaccurate.

This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.

Details


Files with Coverage Reduction New Missed Lines %
src/aggregators/prioritytable.jl 1 86.86%
src/extended_jump_array.jl 1 27.54%
src/jumps.jl 1 87.28%
src/coupling.jl 2 78.18%
src/spatial/spatial_massaction_jump.jl 3 85.45%
<!-- Total: 8 -->
Totals Coverage Status
Change from base Build 3544760886: 0.4%
Covered Lines: 1939
Relevant Lines: 2185

💛 - Coveralls
ChrisRackauckas commented 1 year ago

Looks like this just worked. Okay!

isaacsas commented 1 year ago

The tutorial needs some updates, but I can followup with those.