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SciML / LinearSolve.jl

LinearSolve.jl: High-Performance Unified Interface for Linear Solvers in Julia. Easily switch between factorization and Krylov methods, add preconditioners, and all in one interface.
https://docs.sciml.ai/LinearSolve/stable/
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Error on julia 1.8 when using both LinearSolve and KrylovKit #352

Closed PhilReinhold closed 1 year ago

PhilReinhold commented 1 year ago 
# Project.toml
[deps]
KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"

Then when I run in julia 1.8.5:

julia> using LinearSolve

julia> using KrylovKit
┌ Warning: Error requiring `KrylovKit` from `LinearSolve`
│   exception =
│    LoadError: ArgumentError: Package LinearSolve does not have KrylovKit in its dependencies:
│    - You may have a partially installed environment. Try `Pkg.instantiate()`
│      to ensure all packages in the environment are installed.
│    - Or, if you have LinearSolve checked out for development and have
│      added KrylovKit as a dependency but haven't updated your primary
│      environment's manifest file, try `Pkg.resolve()`.
│    - Otherwise you may need to report an issue with LinearSolve
│    Stacktrace:
│      [1] macro expansion
│        @ ./loading.jl:1167 [inlined]
│      [2] macro expansion
│        @ ./lock.jl:223 [inlined]
│      [3] require(into::Module, mod::Symbol)
│        @ Base ./loading.jl:1144
│      [4] include(mod::Module, _path::String)
│        @ Base ./Base.jl:419
│      [5] include(x::String)
│        @ LinearSolve ~/.julia/packages/LinearSolve/3dHoj/src/LinearSolve.jl:1
│      [6] macro expansion
│        @ ~/.julia/packages/Requires/Z8rfN/src/Requires.jl:40 [inlined]
│      [7] top-level scope
│        @ ~/.julia/packages/LinearSolve/3dHoj/src/LinearSolve.jl:125
│      [8] eval
│        @ ./boot.jl:368 [inlined]
│      [9] eval
│        @ ~/.julia/packages/LinearSolve/3dHoj/src/LinearSolve.jl:1 [inlined]
│     [10] (::LinearSolve.var"#58#64")()
│        @ LinearSolve ~/.julia/packages/Requires/Z8rfN/src/require.jl:101
│     [11] macro expansion
│        @ timing.jl:382 [inlined]
│     [12] err(f::Any, listener::Module, modname::String, file::String, line::Any)
│        @ Requires ~/.julia/packages/Requires/Z8rfN/src/require.jl:47
│     [13] (::LinearSolve.var"#57#63")()
│        @ LinearSolve ~/.julia/packages/Requires/Z8rfN/src/require.jl:100
│     [14] withpath(f::Any, path::String)
│        @ Requires ~/.julia/packages/Requires/Z8rfN/src/require.jl:37
│     [15] (::LinearSolve.var"#56#62")()
│        @ LinearSolve ~/.julia/packages/Requires/Z8rfN/src/require.jl:99
│     [16] #invokelatest#2
│        @ ./essentials.jl:729 [inlined]
│     [17] invokelatest
│        @ ./essentials.jl:726 [inlined]
│     [18] foreach(f::typeof(Base.invokelatest), itr::Vector{Function})
│        @ Base ./abstractarray.jl:2774
│     [19] loadpkg(pkg::Base.PkgId)
│        @ Requires ~/.julia/packages/Requires/Z8rfN/src/require.jl:27
│     [20] #invokelatest#2
│        @ ./essentials.jl:729 [inlined]
│     [21] invokelatest
│        @ ./essentials.jl:726 [inlined]
│     [22] run_package_callbacks(modkey::Base.PkgId)
│        @ Base ./loading.jl:869
│     [23] _require_prelocked(uuidkey::Base.PkgId)
│        @ Base ./loading.jl:1206
│     [24] macro expansion
│        @ ./loading.jl:1180 [inlined]
│     [25] macro expansion
│        @ ./lock.jl:223 [inlined]
│     [26] require(into::Module, mod::Symbol)
│        @ Base ./loading.jl:1144
│     [27] eval
│        @ ./boot.jl:368 [inlined]
│     [28] eval_user_input(ast::Any, backend::REPL.REPLBackend)
│        @ REPL ~/.julia/juliaup/julia-1.8.5+0.aarch64.apple.darwin14/share/julia/stdlib/v1.8/REPL/src/REPL.jl:151
│     [29] repl_backend_loop(backend::REPL.REPLBackend)
│        @ REPL ~/.julia/juliaup/julia-1.8.5+0.aarch64.apple.darwin14/share/julia/stdlib/v1.8/REPL/src/REPL.jl:247
│     [30] start_repl_backend(backend::REPL.REPLBackend, consumer::Any)
│        @ REPL ~/.julia/juliaup/julia-1.8.5+0.aarch64.apple.darwin14/share/julia/stdlib/v1.8/REPL/src/REPL.jl:232
│     [31] run_repl(repl::REPL.AbstractREPL, consumer::Any; backend_on_current_task::Bool)
│        @ REPL ~/.julia/juliaup/julia-1.8.5+0.aarch64.apple.darwin14/share/julia/stdlib/v1.8/REPL/src/REPL.jl:369
│     [32] run_repl(repl::REPL.AbstractREPL, consumer::Any)
│        @ REPL ~/.julia/juliaup/julia-1.8.5+0.aarch64.apple.darwin14/share/julia/stdlib/v1.8/REPL/src/REPL.jl:355
│     [33] (::Base.var"#967#969"{Bool, Bool, Bool})(REPL::Module)
│        @ Base ./client.jl:419
│     [34] #invokelatest#2
│        @ ./essentials.jl:729 [inlined]
│     [35] invokelatest
│        @ ./essentials.jl:726 [inlined]
│     [36] run_main_repl(interactive::Bool, quiet::Bool, banner::Bool, history_file::Bool, color_set::Bool)
│        @ Base ./client.jl:404
│     [37] exec_options(opts::Base.JLOptions)
│        @ Base ./client.jl:318
│     [38] _start()
│        @ Base ./client.jl:522
│    in expression starting at /Users/pcrein/.julia/packages/LinearSolve/3dHoj/ext/LinearSolveKrylovKitExt.jl:1

I'll note that I do not get this error in julia 1.9.2

PhilReinhold commented 1 year ago

If it helps here is the manifest

Manifest.toml 
# Manifest.toml
# This file is machine-generated - editing it directly is not advised

julia_version = "1.8.5"
manifest_format = "2.0"
project_hash = "f4f82f3c607489b974bbf092d976b39fc383e679"

[[deps.ADTypes]]
git-tree-sha1 = "f5c25e8a5b29b5e941b7408bc8cc79fea4d9ef9a"
uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
version = "0.1.6"

[[deps.Adapt]]
deps = ["LinearAlgebra", "Requires"]
git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "3.6.2"

[[deps.ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
version = "1.1.1"

[[deps.ArrayInterface]]
deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31"
uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
version = "7.4.11"

[[deps.ArrayInterfaceCore]]
deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d"
uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2"
version = "0.1.29"

[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"

[[deps.Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"

[[deps.BitTwiddlingConvenienceFunctions]]
deps = ["Static"]
git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b"
uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b"
version = "0.1.5"

[[deps.CPUSummary]]
deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
git-tree-sha1 = "89e0654ed8c7aebad6d5ad235d6242c2d737a928"
uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9"
version = "0.2.3"

[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "1.16.0"

[[deps.ChangesOfVariables]]
deps = ["InverseFunctions", "LinearAlgebra", "Test"]
git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f"
uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
version = "0.1.8"

[[deps.CloseOpenIntervals]]
deps = ["Static", "StaticArrayInterface"]
git-tree-sha1 = "70232f82ffaab9dc52585e0dd043b5e0c6b714f1"
uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9"
version = "0.1.12"

[[deps.CommonSolve]]
git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c"
uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2"
version = "0.2.4"

[[deps.CommonSubexpressions]]
deps = ["MacroTools", "Test"]
git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7"
uuid = "bbf7d656-a473-5ed7-a52c-81e309532950"
version = "0.3.0"

[[deps.Compat]]
deps = ["Dates", "LinearAlgebra", "UUIDs"]
git-tree-sha1 = "e460f044ca8b99be31d35fe54fc33a5c33dd8ed7"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "4.9.0"

[[deps.CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
version = "1.0.1+0"

[[deps.ConstructionBase]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "fe2838a593b5f776e1597e086dcd47560d94e816"
uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
version = "1.5.3"

[[deps.CpuId]]
deps = ["Markdown"]
git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406"
uuid = "adafc99b-e345-5852-983c-f28acb93d879"
version = "0.3.1"

[[deps.DataAPI]]
git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.15.0"

[[deps.DataValueInterfaces]]
git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464"
version = "1.0.0"

[[deps.Dates]]
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"

[[deps.DiffResults]]
deps = ["StaticArraysCore"]
git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621"
uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5"
version = "1.1.0"

[[deps.DiffRules]]
deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"]
git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272"
uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "1.15.1"

[[deps.Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[deps.DocStringExtensions]]
deps = ["LibGit2"]
git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.9.3"

[[deps.Downloads]]
deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
version = "1.6.0"

[[deps.EnumX]]
git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237"
uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
version = "1.0.4"

[[deps.ExprTools]]
git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
version = "0.1.10"

[[deps.FastLapackInterface]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "b12f05108e405dadcc2aff0008db7f831374e051"
uuid = "29a986be-02c6-4525-aec4-84b980013641"
version = "2.0.0"

[[deps.FileWatching]]
uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"

[[deps.ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d"
uuid = "f6369f11-7733-5829-9624-2563aa707210"
version = "0.10.35"

[[deps.FunctionWrappers]]
git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e"
uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e"
version = "1.1.3"

[[deps.FunctionWrappersWrappers]]
deps = ["FunctionWrappers"]
git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8"
uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf"
version = "0.1.3"

[[deps.Future]]
deps = ["Random"]
uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"

[[deps.GPUArraysCore]]
deps = ["Adapt"]
git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0"
uuid = "46192b85-c4d5-4398-a991-12ede77f4527"
version = "0.1.5"

[[deps.HostCPUFeatures]]
deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"]
git-tree-sha1 = "d38bd0d9759e3c6cfa19bdccc314eccf8ce596cc"
uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0"
version = "0.1.15"

[[deps.IfElse]]
git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173"
version = "0.1.1"

[[deps.InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"

[[deps.InverseFunctions]]
deps = ["Test"]
git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46"
uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
version = "0.1.12"

[[deps.IrrationalConstants]]
git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
version = "0.2.2"

[[deps.IteratorInterfaceExtensions]]
git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"

[[deps.JLLWrappers]]
deps = ["Preferences"]
git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.4.1"

[[deps.KLU]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
git-tree-sha1 = "764164ed65c30738750965d55652db9c94c59bfe"
uuid = "ef3ab10e-7fda-4108-b977-705223b18434"
version = "0.4.0"

[[deps.Krylov]]
deps = ["LinearAlgebra", "Printf", "SparseArrays"]
git-tree-sha1 = "6dc4ad9cd74ad4ca0a8e219e945dbd22039f2125"
uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7"
version = "0.9.2"

[[deps.KrylovKit]]
deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"]
git-tree-sha1 = "1a5e1d9941c783b0119897d29f2eb665d876ecf3"
uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
version = "0.6.0"

[[deps.LayoutPointers]]
deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"]
git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1"
uuid = "10f19ff3-798f-405d-979b-55457f8fc047"
version = "0.1.14"

[[deps.Lazy]]
deps = ["MacroTools"]
git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f"
uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0"
version = "0.15.1"

[[deps.LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
version = "0.6.3"

[[deps.LibCURL_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
version = "7.84.0+0"

[[deps.LibGit2]]
deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"

[[deps.LibSSH2_jll]]
deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
version = "1.10.2+0"

[[deps.Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"

[[deps.LinearAlgebra]]
deps = ["Libdl", "libblastrampoline_jll"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"

[[deps.LinearSolve]]
deps = ["ArrayInterface", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
git-tree-sha1 = "d2605a42d5453f510ca0fe37eff8aa0bfc5a3c80"
uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
version = "2.4.2"

[[deps.LogExpFunctions]]
deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.24"

[[deps.Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[deps.LoopVectorization]]
deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"]
git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2"
uuid = "bdcacae8-1622-11e9-2a5c-532679323890"
version = "0.12.165"

[[deps.MacroTools]]
deps = ["Markdown", "Random"]
git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.10"

[[deps.ManualMemory]]
git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667"
version = "0.1.8"

[[deps.Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"

[[deps.MbedTLS_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
version = "2.28.0+0"

[[deps.MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
version = "2022.2.1"

[[deps.NaNMath]]
deps = ["OpenLibm_jll"]
git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "1.0.2"

[[deps.NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
version = "1.2.0"

[[deps.OffsetArrays]]
deps = ["Adapt"]
git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb"
uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
version = "1.12.10"

[[deps.OpenBLAS_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
version = "0.3.20+0"

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oscardssmith commented 1 year ago

I believe this is due to messed up package extensions.

ChrisRackauckas commented 1 year ago

Fixed awhile ago.