SciML / MethodOfLines.jl

Automatic Finite Difference PDE solving with Julia SciML
https://docs.sciml.ai/MethodOfLines/stable/
MIT License
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Method Error with stead state solution #250

Open jenrei opened 1 year ago

jenrei commented 1 year ago

When trying to follow the steady state heat equation example by the letter I get following error:

sol = NonlinearSolve.solve(prob, NewtonRaphson())
ERROR: MethodError: no method matching (SciMLBase.PDENoTimeSolution{Float64, ....

https://docs.sciml.ai/MethodOfLines/stable/tutorials/heatss/

This happens with update to all the latest packages. It did work just fine the other day The package [e084ae63] CoolProp v0.1.0 [a93c6f00] DataFrames v1.5.0 [0c46a032] DifferentialEquations v7.7.0 ⌅ [5b8099bc] DomainSets v0.5.15 [c43c736e] Genie v5.15.0 [7073ff75] IJulia v1.24.0 [615f187c] IfElse v0.1.1 [4076af6c] JuMP v1.9.0 [23fbe1c1] Latexify v0.15.18 [94925ecb] MethodOfLines v0.8.4 [961ee093] ModelingToolkit v8.48.1 [8913a72c] NonlinearSolve v1.5.0 [91a5bcdd] Plots v1.38.7 [0c5d862f] Symbolics v5.1.0 [b8865327] UnicodePlots v3.4.1

ChrisRackauckas commented 1 year ago

Can you show the error?

jenrei commented 1 year ago

ERROR: MethodError: no method matching (SciMLBase.PDENoTimeSolution{Float64, 1, Dict{Num, Matrix{Float64}}, MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}, SciMLBase.NonlinearSolution{Float64, 1, Vector{Float64}, Vector{Float64}, NonlinearProblem{Vector{Float64}, true, SciMLBase.NullParameters, NonlinearFunction{true,SciMLBase.FullSpecialize,…}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}}, NewtonRaphson{0, true, Val{:forward}, Nothing, typeof(NonlinearSolve.DEFAULT_PRECS), true, nothing}, Nothing, Nothing, Nothing}, Tuple{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Vector{SymbolicUtils.BasicSymbolic{Real}}, Vector{Num}, NonlinearProblem{Vector{Float64}, true, SciMLBase.NullParameters, NonlinearFunction{true,SciMLBase.FullSpecialize,…}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}}, NewtonRaphson{0, true, Val{:forward}, Nothing, typeof(NonlinearSolve.DEFAULT_PRECS), true, nothing}, Dict{Num, Interpolations.GriddedInterpolation{Float64, 2, Matrix{Float64}, Interpolations.Gridded{Interpolations.Linear{Interpolations.Throw{Interpolations.OnGrid}}}, Tuple{Vector{Float64}, Vector{Float64}}}}})(::Dict{Num, Matrix{Float64}}, ::SciMLBase.NonlinearSolution{Float64, 1, Vector{Float64}, Vector{Float64}, NonlinearProblem{Vector{Float64}, true, SciMLBase.NullParameters, NonlinearFunction{true,SciMLBase.FullSpecialize,…}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}}, NewtonRaphson{0, true, Val{:forward}, Nothing, typeof(NonlinearSolve.DEFAULT_PRECS), true, nothing}, Nothing, Nothing, Nothing}, ::Tuple{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, ::Vector{SymbolicUtils.BasicSymbolic{Real}}, ::Vector{Num}, ::MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}, ::NonlinearProblem{Vector{Float64}, true, SciMLBase.NullParameters, NonlinearFunction{true,SciMLBase.FullSpecialize,…}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}}, ::NewtonRaphson{0, true, Val{:forward}, Nothing, typeof(NonlinearSolve.DEFAULT_PRECS), true, nothing}, ::Dict{Num, Interpolations.GriddedInterpolation{Float64, 2, Matrix{Float64}, Interpolations.Gridded{Interpolations.Linear{Interpolations.Throw{Interpolations.OnGrid}}}, Tuple{Vector{Float64}, Vector{Float64}}}}, ::SciMLBase.ReturnCode.T)

Some of the types have been truncated in the stacktrace for improved reading. To emit complete information in the stack trace, evaluate TruncatedStacktraces.VERBOSE[] = true and re-run the code.

Stacktrace: [1] SciMLBase.PDENoTimeSolution(sol::SciMLBase.NonlinearSolution{Float64, 1, Vector{Float64}, Vector{Float64}, NonlinearProblem{Vector{Float64}, true, SciMLBase.NullParameters, NonlinearFunction{true,SciMLBase.FullSpecialize,…}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}}, NewtonRaphson{0, true, Val{:forward}, Nothing, typeof(NonlinearSolve.DEFAULT_PRECS), true, nothing}, Nothing, Nothing, Nothing}, metadata::MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}) @ MethodOfLines C:\Users\JentschR.julia\packages\MethodOfLines\44Kiz\src\interface\solution\timeindep.jl:31 [2] wrap_sol(sol::SciMLBase.NonlinearSolution{Float64, 1, Vector{Float64}, Vector{Float64}, NonlinearProblem{Vector{Float64}, true, SciMLBase.NullParameters, NonlinearFunction{true,SciMLBase.FullSpecialize,…}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}}, NewtonRaphson{0, true, Val{:forward}, Nothing, typeof(NonlinearSolve.DEFAULT_PRECS), true, nothing}, Nothing, Nothing, Nothing}, metadata::MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}) @ SciMLBase C:\Users\JentschR.julia\packages\SciMLBase\E9FrD\src\solutions\pde_solutions.jl:148 [3] wrap_sol(sol::SciMLBase.NonlinearSolution{Float64, 1, Vector{Float64}, Vector{Float64}, NonlinearProblem{Vector{Float64}, true, SciMLBase.NullParameters, NonlinearFunction{true,SciMLBase.FullSpecialize,…}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}}, NewtonRaphson{0, true, Val{:forward}, Nothing, typeof(NonlinearSolve.DEFAULT_PRECS), true, nothing}, Nothing, Nothing, Nothing}) @ SciMLBase C:\Users\JentschR.julia\packages\SciMLBase\E9FrD\src\solutions\basic_solutions.jl:101 [4] solve(prob::NonlinearProblem{Vector{Float64}, true, SciMLBase.NullParameters, NonlinearFunction{true,SciMLBase.FullSpecialize,…}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}}, args::NewtonRaphson{0, true, Val{:forward}, Nothing, typeof(NonlinearSolve.DEFAULT_PRECS), true, nothing}; sensealg::Nothing, u0::Nothing, p::Nothing, wrap::Val{true}, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ DiffEqBase C:\Users\JentschR.julia\packages\DiffEqBase\NxmIk\src\solve.jl:899 [5] solve(prob::NonlinearProblem{Vector{Float64}, true, SciMLBase.NullParameters, NonlinearFunction{true,SciMLBase.FullSpecialize,…}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, MethodOfLines.MOLMetadata{Val{false}(), MethodOfLines.DiscreteSpace{2, 1, MethodOfLines.CenterAlignedGrid}, MOLFiniteDifference{MethodOfLines.CenterAlignedGrid, MethodOfLines.ScalarizedDiscretization}, PDESystem, Base.RefValue{Any}, MethodOfLines.ScalarizedDiscretization}}, args::NewtonRaphson{0, true, Val{:forward}, Nothing, typeof(NonlinearSolve.DEFAULT_PRECS), true, nothing}) @ DiffEqBase C:\Users\JentschR.julia\packages\DiffEqBase\NxmIk\src\solve.jl:889

ChrisRackauckas commented 1 year ago

What versions? Share ]st

jenrei commented 1 year ago

[a93c6f00] DataFrames v1.5.0 [0c46a032] DifferentialEquations v7.7.0 ⌅ [5b8099bc] DomainSets v0.5.15 [c43c736e] Genie v5.15.0 [7073ff75] IJulia v1.24.0 [615f187c] IfElse v0.1.1 [4076af6c] JuMP v1.9.0 [23fbe1c1] Latexify v0.15.18 [94925ecb] MethodOfLines v0.8.4 [961ee093] ModelingToolkit v8.48.1 [8913a72c] NonlinearSolve v1.5.0 [91a5bcdd] Plots v1.38.7 [0c5d862f] Symbolics v5.1.0 [b8865327] UnicodePlots v3.4.1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use status --outdated

How can I show the dependency versions?

ChrisRackauckas commented 1 year ago

]st -m

jenrei commented 1 year ago

Status C:\Users\JentschR\.julia\environments\v1.8\Manifest.toml ⌅ [c3fe647b] AbstractAlgebra v0.27.10 [1520ce14] AbstractTrees v0.4.4 [79e6a3ab] Adapt v3.6.1 [c7e460c6] ArgParse v1.1.4 [ec485272] ArnoldiMethod v0.2.0 [4fba245c] ArrayInterface v7.2.1 [30b0a656] ArrayInterfaceCore v0.1.29 [4c555306] ArrayLayouts v0.8.18 [13072b0f] AxisAlgorithms v1.0.1 [aae01518] BandedMatrices v0.17.16 [6e4b80f9] BenchmarkTools v1.3.2 [e2ed5e7c] Bijections v0.1.4 [d1d4a3ce] BitFlags v0.1.7 [62783981] BitTwiddlingConvenienceFunctions v0.1.5 [764a87c0] BoundaryValueDiffEq v2.11.0 [fa961155] CEnum v0.4.2 [2a0fbf3d] CPUSummary v0.2.2 [00ebfdb7] CSTParser v3.3.6 [49dc2e85] Calculus v0.5.1 [d360d2e6] ChainRulesCore v1.15.7 [9e997f8a] ChangesOfVariables v0.1.6 [fb6a15b2] CloseOpenIntervals v0.1.12 [da1fd8a2] CodeTracking v1.2.2 [523fee87] CodecBzip2 v0.7.2 [944b1d66] CodecZlib v0.7.1 [35d6a980] ColorSchemes v3.20.0 [3da002f7] ColorTypes v0.11.4 [c3611d14] ColorVectorSpace v0.9.10 [5ae59095] Colors v0.12.10 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[8ea1fca8] TermInterface v0.3.3 [b718987f] TextWrap v1.0.1 [8290d209] ThreadingUtilities v0.5.1 [a759f4b9] TimerOutputs v0.5.22 [0796e94c] Tokenize v0.5.25 [3bb67fe8] TranscodingStreams v0.9.11 [a2a6695c] TreeViews v0.3.0 [d5829a12] TriangularSolve v0.1.19 [410a4b4d] Tricks v0.1.6 [781d530d] TruncatedStacktraces v1.1.0 [30578b45] URIParser v0.4.1 [5c2747f8] URIs v1.4.2 [3a884ed6] UnPack v1.0.2 [1cfade01] UnicodeFun v0.4.1 [b8865327] UnicodePlots v3.4.1 [1986cc42] Unitful v1.12.4 [a7c27f48] Unityper v0.1.2 [41fe7b60] Unzip v0.2.0 [3d5dd08c] VectorizationBase v0.21.61 [81def892] VersionParsing v1.3.0 [19fa3120] VertexSafeGraphs v0.2.0 [efce3f68] WoodburyMatrices v0.5.5 [ddb6d928] YAML v0.4.8 [c2297ded] ZMQ v1.2.2 [700de1a5] ZygoteRules v0.2.2 [6e34b625] Bzip2_jll v1.0.8+0 [83423d85] Cairo_jll v1.16.1+1 [2e619515] Expat_jll v2.4.8+0 [b22a6f82] FFMPEG_jll v4.4.2+2 [a3f928ae] Fontconfig_jll v2.13.93+0 [d7e528f0] FreeType2_jll v2.10.4+0 [559328eb] FriBidi_jll v1.0.10+0 [0656b61e] GLFW_jll v3.3.8+0 [d2c73de3] GR_jll v0.71.7+0 [78b55507] Gettext_jll v0.21.0+0 [7746bdde] Glib_jll v2.74.0+2 [3b182d85] Graphite2_jll v1.3.14+0 [2e76f6c2] HarfBuzz_jll v2.8.1+1 [aacddb02] JpegTurbo_jll v2.1.91+0 [c1c5ebd0] LAME_jll v3.100.1+0 [88015f11] LERC_jll v3.0.0+1 [dd4b983a] LZO_jll v2.10.1+0 ⌅ [e9f186c6] Libffi_jll v3.2.2+1 [d4300ac3] Libgcrypt_jll v1.8.7+0 [7e76a0d4] Libglvnd_jll v1.6.0+0 [7add5ba3] Libgpg_error_jll v1.42.0+0 [94ce4f54] Libiconv_jll v1.16.1+2 [4b2f31a3] Libmount_jll v2.35.0+0 [89763e89] Libtiff_jll v4.4.0+0 [38a345b3] Libuuid_jll v2.36.0+0 [4c82536e] Nettle_jll v3.7.2+0 [e7412a2a] Ogg_jll v1.3.5+1 [458c3c95] OpenSSL_jll v1.1.20+0 [efe28fd5] OpenSpecFun_jll v0.5.5+0 [91d4177d] Opus_jll v1.3.2+0 [30392449] Pixman_jll v0.40.1+0 [ea2cea3b] Qt5Base_jll v5.15.3+2 [f50d1b31] Rmath_jll v0.4.0+0 [fb77eaff] Sundials_jll v5.2.1+0 [a2964d1f] Wayland_jll v1.21.0+0 [2381bf8a] Wayland_protocols_jll v1.25.0+0 [02c8fc9c] XML2_jll v2.10.3+0 [aed1982a] XSLT_jll v1.1.34+0 [4f6342f7] Xorg_libX11_jll v1.6.9+4 [0c0b7dd1] Xorg_libXau_jll v1.0.9+4 [935fb764] Xorg_libXcursor_jll v1.2.0+4 [a3789734] Xorg_libXdmcp_jll v1.1.3+4 [1082639a] Xorg_libXext_jll v1.3.4+4 [d091e8ba] Xorg_libXfixes_jll v5.0.3+4 [a51aa0fd] Xorg_libXi_jll v1.7.10+4 [d1454406] Xorg_libXinerama_jll v1.1.4+4 [ec84b674] Xorg_libXrandr_jll v1.5.2+4 [ea2f1a96] Xorg_libXrender_jll v0.9.10+4 [14d82f49] Xorg_libpthread_stubs_jll v0.1.0+3 [c7cfdc94] Xorg_libxcb_jll v1.13.0+3 [cc61e674] Xorg_libxkbfile_jll v1.1.0+4 [12413925] Xorg_xcb_util_image_jll v0.4.0+1 [2def613f] Xorg_xcb_util_jll v0.4.0+1 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1 [35661453] Xorg_xkbcomp_jll v1.4.2+4 [33bec58e] Xorg_xkeyboard_config_jll v2.27.0+4 [c5fb5394] Xorg_xtrans_jll v1.4.0+3 [8f1865be] ZeroMQ_jll v4.3.4+0 [3161d3a3] Zstd_jll v1.5.4+0 ⌅ [214eeab7] fzf_jll v0.29.0+0 [a4ae2306] libaom_jll v3.4.0+0 [0ac62f75] libass_jll v0.15.1+0 [f638f0a6] libfdk_aac_jll v2.0.2+0 [b53b4c65] libpng_jll v1.6.38+0 [a9144af2] libsodium_jll v1.0.20+0 [f27f6e37] libvorbis_jll v1.3.7+1 [1270edf5] x264_jll v2021.5.5+0 [dfaa095f] x265_jll v3.5.0+0 [d8fb68d0] xkbcommon_jll v1.4.1+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8bb1440f] DelimitedFiles [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.3 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.8.0 [de0858da] Printf [9abbd945] Profile [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays [10745b16] Statistics [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.0 [a4e569a6] Tar v1.10.1 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.0.1+0 [781609d7] GMP_jll v6.2.1+2 [deac9b47] LibCURL_jll v7.84.0+0 [29816b5a] LibSSH2_jll v1.10.2+0 [c8ffd9c3] MbedTLS_jll v2.28.0+0 [14a3606d] MozillaCACerts_jll v2022.2.1 [4536629a] OpenBLAS_jll v0.3.20+0 [05823500] OpenLibm_jll v0.8.1+0 [efcefdf7] PCRE2_jll v10.40.0+0 [bea87d4a] SuiteSparse_jll v5.10.1+0 [83775a58] Zlib_jll v1.2.12+3 [8e850b90] libblastrampoline_jll v5.1.1+0 [8e850ede] nghttp2_jll v1.48.0+0 [3f19e933] p7zip_jll v17.4.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use status --outdated -m