SciML / ModelingToolkit.jl

An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations
https://mtk.sciml.ai/dev/
Other
1.41k stars 204 forks source link

Reversediff with in optimization problem #2979

Open mmbosschaert opened 3 weeks ago

mmbosschaert commented 3 weeks ago

Describe the bug 🐞

Changing the differentiation method in the optimization example to AutoReverseDiff() or AutoZygote() yields errors.

Expected behavior

To be able to use reverse differentiation.

Minimal Reproducible Example πŸ‘‡

using ModelingToolkit
using ModelingToolkit: t_nounits as t, D_nounits as D

@parameters Ξ± Ξ² Ξ³ Ξ΄
@variables x(t) y(t)
eqs = [D(x) ~ (Ξ± - Ξ² * y) * x
  D(y) ~ (Ξ΄ * x - Ξ³) * y]
@mtkbuild odesys = ODESystem(eqs, t)

using OrdinaryDiffEq

odeprob = ODEProblem(
  odesys, [x => 1.0, y => 1.0], (0.0, 10.0), [Ξ± => 1.5, Ξ² => 1.0, Ξ³ => 3.0, Ξ΄ => 1.0])
timesteps = 0.0:0.1:10.0
sol = solve(odeprob, Tsit5(); saveat=timesteps)
data = Array(sol)
# add some random noise
data = data + 0.01 * randn(size(data))

using SymbolicIndexingInterface: parameter_values, state_values
using SciMLStructures: Tunable, replace, replace!

function loss(x, p)
  odeprob = p[1] # ODEProblem stored as parameters to avoid using global variables
  ps = parameter_values(odeprob) # obtain the parameter object from the problem
  ps = replace(Tunable(), ps, x) # create a copy with the values passed to the loss function
  # remake the problem, passing in our new parameter object
  newprob = remake(odeprob; p=ps)
  timesteps = p[2]
  sol = solve(newprob, AutoTsit5(Rosenbrock23()); saveat=timesteps)
  truth = p[3]
  data = Array(sol)
  return sum((truth .- data) .^ 2) / length(truth)
end

using Optimization
using OptimizationOptimJL

# manually create an OptimizationFunction to ensure usage of `ForwardDiff`, which will
# require changing the types of parameters from `Float64` to `ForwardDiff.Dual`
optfn = OptimizationFunction(loss, Optimization.AutoForwardDiff())
# parameter object is a tuple, to store differently typed objects together
optprob = OptimizationProblem(
  optfn, rand(4), (odeprob, timesteps, data), lb=0.1zeros(4), ub=3ones(4))
sol = solve(optprob, BFGS())

using Zygote
using ReverseDiff
using SciMLSensitivity

optfn = OptimizationFunction(loss, Optimization.AutoReverseDiff())
optprob = OptimizationProblem(
  optfn, rand(4), (odeprob, timesteps, data), lb=0.1zeros(4), ub=3ones(4))
sol = solve(optprob, BFGS())

optfn = OptimizationFunction(loss, Optimization.AutoZygote())
optprob = OptimizationProblem(
  optfn, rand(4), (odeprob, timesteps, data), lb=0.1zeros(4), ub=3ones(4))
sol = solve(optprob, BFGS())

Error & Stacktrace ⚠️

With AutoReverseDiff

julia> optfn = OptimizationFunction(loss, Optimization.AutoReverseDiff())
(::OptimizationFunction{true, AutoReverseDiff{false}, typeof(loss), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, 
typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}) (generic function with 1 method)

julia> optprob = OptimizationProblem(
         optfn, rand(4), (odeprob, timesteps, data), lb=0.1zeros(4), ub=3ones(4))
OptimizationProblem. In-place: true
u0: 4-element Vector{Float64}:
 0.35815540168643545
 0.1319150897371667
 0.9690776505305917
 0.2801614947750005

julia> sol = solve(optprob, BFGS())
ERROR: StackOverflowError:
Stacktrace:
     [1] anyeltypedual(::Type{T}, ::Type{Val{counter}}) where {T<:Union{Set, AbstractArray}, counter}
       @ DiffEqBase ~/.julia/packages/DiffEqBase/sCsah/src/forwarddiff.jl:242
--- the last 1 lines are repeated 1 more time ---
     [3] (::Base.MappingRF{typeof(DiffEqBase.anyeltypedual), Base.BottomRF{typeof(DiffEqBase.promote_dual)}})(acc::Type, x::Type)
       @ Base ./reduce.jl:100
     [4] _foldl_impl(op::Base.MappingRF{typeof(DiffEqBase.anyeltypedual), Base.BottomRF{typeof(DiffEqBase.promote_dual)}}, init::Type, itr::Core.SimpleVector)
       @ Base ./reduce.jl:62
     [5] foldl_impl
       @ ./reduce.jl:48 [inlined]
     [6] mapfoldl_impl
       @ ./reduce.jl:44 [inlined]
     [7] mapfoldl
       @ ./reduce.jl:175 [inlined]
     [8] mapreduce
       @ ./reduce.jl:307 [inlined]
     [9] __anyeltypedual(::Type{ReverseDiff.TrackedReal{Float64, Float64, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}}})
       @ DiffEqBase ~/.julia/packages/DiffEqBase/sCsah/src/forwarddiff.jl:227
    [10] anyeltypedual(::Type{ReverseDiff.TrackedReal{Float64, Float64, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}}}, ::Type{Val{0}})
       @ DiffEqBase ~/.julia/packages/DiffEqBase/sCsah/src/forwarddiff.jl:233
--- the last 1 lines are repeated 1 more time ---
--- the last 11 lines are repeated 6151 more times ---
 [67673] anyeltypedual(::Type{T}, ::Type{Val{counter}}) where {T<:Union{Set, AbstractArray}, counter}
       @ DiffEqBase ~/.julia/packages/DiffEqBase/sCsah/src/forwarddiff.jl:242

and with AutoZygote

julia> optfn = OptimizationFunction(loss, Optimization.AutoZygote())
(::OptimizationFunction{true, AutoZygote, typeof(loss), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciML
Base.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}) (generic function with 1 method)

julia> optprob = OptimizationProblem(
         optfn, rand(4), (odeprob, timesteps, data), lb=0.1zeros(4), ub=3ones(4))
OptimizationProblem. In-place: true
u0: 4-element Vector{Float64}:
 0.31077860782384037
 0.9341453115627105
 0.34756647375349614
 0.798118214086817

julia> sol = solve(optprob, BFGS())
ERROR: Need an adjoint for constructor MTKParameters{Vector{Float64}, StaticArraysCore.SizedVector{0, Any, Vector{Any}}, Tuple{}, Tuple{}}. Gradient is of type MTKParameters{Vector{Floa
t64}, StaticArraysCore.SizedVector{0, Any, Vector{Any}}, Tuple{}, Tuple{}}
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] (::Zygote.Jnew{MTKParameters{…}, Nothing, false})(Ξ”::MTKParameters{Vector{…}, StaticArraysCore.SizedVector{…}, Tuple{}, Tuple{}})
    @ Zygote ~/.julia/packages/Zygote/nsBv0/src/lib/lib.jl:330
  [3] (::Zygote.var"#2210#back#313"{Zygote.Jnew{MTKParameters{…}, Nothing, false}})(Ξ”::MTKParameters{Vector{Float64}, StaticArraysCore.SizedVector{0, Any, Vector{…}}, Tuple{}, Tuple{}})
    @ Zygote ~/.julia/packages/ZygoteRules/M4xmc/src/adjoint.jl:72
  [4] MTKParameters
    @ ~/.julia/packages/ModelingToolkit/2KZCu/src/systems/parameter_buffer.jl:7 [inlined]
  [5] (::Zygote.Pullback{Tuple{…}, Tuple{…}})(Ξ”::MTKParameters{Vector{…}, StaticArraysCore.SizedVector{…}, Tuple{}, Tuple{}})
    @ Zygote ~/.julia/packages/Zygote/nsBv0/src/compiler/interface2.jl:0
  [6] setfields_object
    @ ~/.julia/packages/ConstructionBase/c2lWA/src/ConstructionBase.jl:195 [inlined]
  [7] (::Zygote.Pullback{Tuple{…}, Tuple{…}})(Ξ”::MTKParameters{Vector{…}, StaticArraysCore.SizedVector{…}, Tuple{}, Tuple{}})
    @ Zygote ~/.julia/packages/Zygote/nsBv0/src/compiler/interface2.jl:0
  [8] setproperties_object
    @ ~/.julia/packages/ConstructionBase/c2lWA/src/ConstructionBase.jl:208 [inlined]
  [9] (::Zygote.Pullback{Tuple{…}, Tuple{…}})(Ξ”::MTKParameters{Vector{…}, StaticArraysCore.SizedVector{…}, Tuple{}, Tuple{}})
    @ Zygote ~/.julia/packages/Zygote/nsBv0/src/compiler/interface2.jl:0
 [10] setproperties
    @ ~/.julia/packages/ConstructionBase/c2lWA/src/ConstructionBase.jl:136 [inlined]
 [11] (::Zygote.Pullback{Tuple{…}, Tuple{…}})(Ξ”::MTKParameters{Vector{…}, StaticArraysCore.SizedVector{…}, Tuple{}, Tuple{}})
    @ Zygote ~/.julia/packages/Zygote/nsBv0/src/compiler/interface2.jl:0
 [12] set
    @ ~/.julia/packages/Setfield/PdKfV/src/lens.jl:122 [inlined]
 [13] replace
    @ ~/.julia/packages/Setfield/PdKfV/src/sugar.jl:197 [inlined]
 [14] (::Zygote.Pullback{Tuple{…}, Tuple{…}})(Ξ”::MTKParameters{Vector{…}, StaticArraysCore.SizedVector{…}, Tuple{}, Tuple{}})
    @ Zygote ~/.julia/packages/Zygote/nsBv0/src/compiler/interface2.jl:0
 [15] loss
    @ ./REPL[16]:4 [inlined]
 [16] (::Zygote.Pullback{Tuple{…}, Tuple{…}})(Ξ”::Float64)
    @ Zygote ~/.julia/packages/Zygote/nsBv0/src/compiler/interface2.jl:0
 [17] #291
    @ ~/.julia/packages/Zygote/nsBv0/src/lib/lib.jl:206 [inlined]
 [18] #2169#back
    @ ~/.julia/packages/ZygoteRules/M4xmc/src/adjoint.jl:72 [inlined]
 [19] OptimizationFunction
    @ ~/.julia/packages/SciMLBase/OXryf/src/scimlfunctions.jl:3812 [inlined]
 [20] #291
    @ ~/.julia/packages/Zygote/nsBv0/src/lib/lib.jl:206 [inlined]
 [21] (::Zygote.var"#2169#back#293"{Zygote.var"#291#292"{Tuple{Tuple{…}, Tuple{}}, Zygote.Pullback{Tuple{…}, Tuple{…}}}})(Ξ”::Float64)
    @ Zygote ~/.julia/packages/ZygoteRules/M4xmc/src/adjoint.jl:72
 [22] #37
    @ ~/.julia/packages/OptimizationBase/KIIy3/ext/OptimizationZygoteExt.jl:94 [inlined]
 [23] (::Zygote.Pullback{Tuple{…}, Tuple{…}})(Ξ”::Float64)
    @ Zygote ~/.julia/packages/Zygote/nsBv0/src/compiler/interface2.jl:0
 [24] #291
    @ ~/.julia/packages/Zygote/nsBv0/src/lib/lib.jl:206 [inlined]
 [25] #2169#back
    @ ~/.julia/packages/ZygoteRules/M4xmc/src/adjoint.jl:72 [inlined]
 [26] #39
    @ ~/.julia/packages/OptimizationBase/KIIy3/ext/OptimizationZygoteExt.jl:97 [inlined]
 [27] (::Zygote.Pullback{Tuple{…}, Tuple{…}})(Ξ”::Float64)
    @ Zygote ~/.julia/packages/Zygote/nsBv0/src/compiler/interface2.jl:0
 [28] (::Zygote.var"#75#76"{Zygote.Pullback{Tuple{…}, Tuple{…}}})(Ξ”::Float64)
    @ Zygote ~/.julia/packages/Zygote/nsBv0/src/compiler/interface.jl:91
 [29] gradient(f::Function, args::Vector{Float64})
    @ Zygote ~/.julia/packages/Zygote/nsBv0/src/compiler/interface.jl:148
 [30] (::OptimizationZygoteExt.var"#38#56"{OptimizationZygoteExt.var"#37#55"{OptimizationFunction{…}, OptimizationBase.ReInitCache{…}}})(::Vector{Float64}, ::Vector{Float64})
    @ OptimizationZygoteExt ~/.julia/packages/OptimizationBase/KIIy3/ext/OptimizationZygoteExt.jl:97
 [31] (::OptimizationOptimJL.var"#19#23"{OptimizationCache{…}, OptimizationOptimJL.var"#18#22"{…}})(G::Vector{Float64}, ΞΈ::Vector{Float64})
    @ OptimizationOptimJL ~/.julia/packages/OptimizationOptimJL/hDX5k/src/OptimizationOptimJL.jl:297
 [32] value_gradient!!(obj::OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, x::Vector{Float64})
    @ NLSolversBase ~/.julia/packages/NLSolversBase/kavn7/src/interface.jl:82
 [33] value_gradient!!(bw::Optim.BarrierWrapper{OnceDifferentiable{…}, Optim.BoxBarrier{…}, Float64, Float64, Vector{…}}, x::Vector{Float64})
    @ Optim ~/.julia/packages/Optim/ZhuZN/src/multivariate/solvers/constrained/fminbox.jl:81
 [34] initial_state(method::BFGS{…}, options::Optim.Options{…}, d::Optim.BarrierWrapper{…}, initial_x::Vector{…})
    @ Optim ~/.julia/packages/Optim/ZhuZN/src/multivariate/solvers/first_order/bfgs.jl:94
 [35] optimize(df::OnceDifferentiable{…}, l::Vector{…}, u::Vector{…}, initial_x::Vector{…}, F::Fminbox{…}, options::Optim.Options{…})
    @ Optim ~/.julia/packages/Optim/ZhuZN/src/multivariate/solvers/constrained/fminbox.jl:322
 [36] __solve(cache::OptimizationCache{…})
    @ OptimizationOptimJL ~/.julia/packages/OptimizationOptimJL/hDX5k/src/OptimizationOptimJL.jl:321
 [37] solve!(cache::OptimizationCache{…})
    @ SciMLBase ~/.julia/packages/SciMLBase/OXryf/src/solve.jl:188
 [38] solve(::OptimizationProblem{…}, ::BFGS{…}; kwargs::@Kwargs{})
    @ SciMLBase ~/.julia/packages/SciMLBase/OXryf/src/solve.jl:96
 [39] solve(::OptimizationProblem{…}, ::BFGS{…})
    @ SciMLBase ~/.julia/packages/SciMLBase/OXryf/src/solve.jl:93
 [40] top-level scope
    @ REPL[56]:1
Some type information was truncated. Use `show(err)` to see complete types.

julia> 

Environment (please complete the following information):

(@v1.10) pkg> st
Status `~/.julia/environments/v1.10/Project.toml`
  [cbdf2221] AlgebraOfGraphics v0.8.1
  [6e4b80f9] BenchmarkTools v1.5.0
  [ad839575] Blink v0.12.9
  [336ed68f] CSV v0.10.14
  [052768ef] CUDA v5.4.3
  [13f3f980] CairoMakie v0.12.7
  [324d7699] CategoricalArrays v0.10.8
  [35d6a980] ColorSchemes v3.26.0
  [5ae59095] Colors v0.12.11
  [a93c6f00] DataFrames v1.6.1
  [0c46a032] DifferentialEquations v7.13.0
  [31c24e10] Distributions v0.25.110
  [e30172f5] Documenter v1.5.0
  [bbc10e6e] DynamicHMC v3.4.7
  [366bfd00] DynamicPPL v0.28.4
  [48062228] FilePathsBase v0.9.21
  [1a297f60] FillArrays v1.12.0
  [6a86dc24] FiniteDiff v2.24.0
  [f6369f11] ForwardDiff v0.10.36
  [38e38edf] GLM v1.9.0
  [e9467ef8] GLMakie v0.10.7
  [c27321d9] Glob v1.3.1
  [f67ccb44] HDF5 v0.17.2
  [cd3eb016] HTTP v1.10.8
  [7073ff75] IJulia v1.25.0
  [5903a43b] Infiltrator v1.8.3
  [4138dd39] JLD v0.13.5
  [033835bb] JLD2 v0.4.51
  [0f8b85d8] JSON3 v1.14.0
  [23fbe1c1] Latexify v0.16.5
  [2ab3a3ac] LogExpFunctions v0.3.28
  [961ee093] ModelingToolkit v9.33.1
  [2774e3e8] NLsolve v4.5.1
  [429524aa] Optim v1.9.4
  [7f7a1694] Optimization v3.27.0
  [36348300] OptimizationOptimJL v0.3.2
  [1dea7af3] OrdinaryDiffEq v6.87.0
  [d96e819e] Parameters v0.12.3
  [14b8a8f1] PkgTemplates v0.7.51
  [91a5bcdd] Plots v1.40.5
  [f27b6e38] Polynomials v4.0.11
  [d236fae5] PreallocationTools v0.4.24
  [8162dcfd] PrettyPrint v0.2.0
  [438e738f] PyCall v1.96.4
  [df47a6cb] RData v1.0.0
  [37e2e3b7] ReverseDiff v1.15.3
  [295af30f] Revise v3.5.18
  [0bca4576] SciMLBase v2.50.1
  [1ed8b502] SciMLSensitivity v7.65.0
  [53ae85a6] SciMLStructures v1.4.2
  [efcf1570] Setfield v1.1.1
  [2913bbd2] StatsBase v0.34.3
  [4c63d2b9] StatsFuns v1.3.1
  [f3b207a7] StatsPlots v0.15.7
  [2efcf032] SymbolicIndexingInterface v0.3.28
  [0c5d862f] Symbolics v6.2.0
  [40c74d1a] TableView v0.8.0
  [9e3dc215] TimeSeries v0.24.2
  [fce5fe82] Turing v0.33.3
  [0004c1f4] TuringGLM v2.11.0
  [3a884ed6] UnPack v1.0.2
  [276b4fcb] WGLMakie v0.10.7
  [e88e6eb3] Zygote v0.6.70
  [9abbd945] Profile

Status `~/.julia/environments/v1.10/Manifest.toml`
  [47edcb42] ADTypes v1.7.1
  [a4c015fc] ANSIColoredPrinters v0.0.1
  [621f4979] AbstractFFTs v1.5.0
  [80f14c24] AbstractMCMC v5.2.0
  [7a57a42e] AbstractPPL v0.8.4
  [1520ce14] AbstractTrees v0.4.5
  [7d9f7c33] Accessors v0.1.37
  [79e6a3ab] Adapt v4.0.4
  [35492f91] AdaptivePredicates v1.1.1
  [0bf59076] AdvancedHMC v0.6.1
  [5b7e9947] AdvancedMH v0.8.2
  [576499cb] AdvancedPS v0.6.0
βŒƒ [b5ca4192] AdvancedVI v0.2.5
  [cbdf2221] AlgebraOfGraphics v0.8.1
  [66dad0bd] AliasTables v1.1.3
  [27a7e980] Animations v0.4.1
  [dce04be8] ArgCheck v2.3.0
βŒ… [ec485272] ArnoldiMethod v0.2.0
βŒ… [7d9fca2a] Arpack v0.5.3
  [4fba245c] ArrayInterface v7.15.0
  [4c555306] ArrayLayouts v1.10.3
  [69666777] Arrow v2.7.2
  [31f734f8] ArrowTypes v2.3.0
  [bf4720bc] AssetRegistry v0.1.0
  [a9b6321e] Atomix v0.1.0
  [67c07d97] Automa v1.0.4
  [13072b0f] AxisAlgorithms v1.1.0
  [39de3d68] AxisArrays v0.4.7
  [ab4f0b2a] BFloat16s v0.5.0
  [093aae92] BSplineKit v0.17.6
  [aae01518] BandedMatrices v1.7.3
  [198e06fe] BangBang v0.4.3
  [9718e550] Baselet v0.1.1
  [6e4b80f9] BenchmarkTools v1.5.0
  [e2ed5e7c] Bijections v0.1.7
βŒƒ [76274a88] Bijectors v0.13.12
  [d1d4a3ce] BitFlags v0.1.9
  [c3b6d118] BitIntegers v0.3.1
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [ad839575] Blink v0.12.9
βŒ… [8e7c35d0] BlockArrays v0.16.43
  [a74b3585] Blosc v0.7.3
  [824d6782] Bonito v3.1.2
  [764a87c0] BoundaryValueDiffEq v5.9.1
  [fa961155] CEnum v0.5.0
  [2a0fbf3d] CPUSummary v0.2.6
  [00ebfdb7] CSTParser v3.4.3
  [336ed68f] CSV v0.10.14
  [052768ef] CUDA v5.4.3
  [1af6417a] CUDA_Runtime_Discovery v0.3.4
  [159f3aea] Cairo v1.1.0
  [13f3f980] CairoMakie v0.12.7
  [7057c7e9] Cassette v0.3.13
  [324d7699] CategoricalArrays v0.10.8
  [082447d4] ChainRules v1.69.0
  [d360d2e6] ChainRulesCore v1.24.0
  [9e997f8a] ChangesOfVariables v0.1.8
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [aaaa29a8] Clustering v0.15.7
  [da1fd8a2] CodeTracking v1.3.6
  [5ba52731] CodecLz4 v0.4.5
  [944b1d66] CodecZlib v0.7.6
  [6b39b394] CodecZstd v0.8.5
  [a2cac450] ColorBrewer v0.4.0
  [35d6a980] ColorSchemes v3.26.0
  [3da002f7] ColorTypes v0.11.5
  [c3611d14] ColorVectorSpace v0.10.0
  [5ae59095] Colors v0.12.11
  [861a8166] Combinatorics v1.0.2
  [a80b9123] CommonMark v0.8.12
  [38540f10] CommonSolve v0.2.4
  [bbf7d656] CommonSubexpressions v0.3.0
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.16.0
  [b152e2b5] CompositeTypes v0.1.4
  [a33af91c] CompositionsBase v0.1.2
  [2569d6c7] ConcreteStructs v0.2.3
  [f0e56b4a] ConcurrentUtilities v2.4.2
  [8f4d0f93] Conda v1.10.2
  [88cd18e8] ConsoleProgressMonitor v0.1.2
  [187b0558] ConstructionBase v1.5.7
  [d38c429a] Contour v0.6.3
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [717857b8] DSP v0.7.9
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.6.1
  [864edb3b] DataStructures v0.18.20
  [e2d170a0] DataValueInterfaces v1.0.0
  [244e2a9f] DefineSingletons v0.1.2
  [927a84f5] DelaunayTriangulation v1.1.3
  [bcd4f6db] DelayDiffEq v5.48.0
  [8bb1440f] DelimitedFiles v1.9.1
  [b429d917] DensityInterface v0.4.0
  [85a47980] Dictionaries v0.4.2
  [2b5f629d] DiffEqBase v6.154.0
  [459566f4] DiffEqCallbacks v3.8.0
  [77a26b50] DiffEqNoiseProcess v5.23.0
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [0c46a032] DifferentialEquations v7.13.0
  [a0c0ee7d] DifferentiationInterface v0.5.14
  [b4f34e82] Distances v0.10.11
  [31c24e10] Distributions v0.25.110
  [ced4e74d] DistributionsAD v0.6.55
  [ffbed154] DocStringExtensions v0.9.3
  [e30172f5] Documenter v1.5.0
  [5b8099bc] DomainSets v0.7.14
  [bbc10e6e] DynamicHMC v3.4.7
  [366bfd00] DynamicPPL v0.28.4
βŒ… [7c1d4256] DynamicPolynomials v0.5.7
βŒ… [06fc5a27] DynamicQuantities v0.13.2
  [b7d42ee7] Einsum v0.4.1
  [da5c29d0] EllipsisNotation v1.8.0
  [cad2338a] EllipticalSliceSampling v2.0.0
  [4e289a0a] EnumX v1.0.4
  [7da242da] Enzyme v0.12.31
  [f151be2c] EnzymeCore v0.7.8
  [429591f6] ExactPredicates v2.2.8
  [460bff9d] ExceptionUnwrapping v0.1.10
  [d4d017d3] ExponentialUtilities v1.26.1
  [e2ba6199] ExprTools v0.1.10
βŒ… [6b7a57c9] Expronicon v0.8.5
  [411431e0] Extents v0.1.3
  [c87230d0] FFMPEG v0.4.1
  [7a1cc6ca] FFTW v1.8.0
  [9d29842c] FastAlmostBandedMatrices v0.1.3
  [7034ab61] FastBroadcast v0.3.5
  [9aa1b823] FastClosures v0.3.2
  [442a2c76] FastGaussQuadrature v1.0.2
  [29a986be] FastLapackInterface v2.0.4
  [5789e2e9] FileIO v1.16.3
  [8fc22ac5] FilePaths v0.8.3
  [48062228] FilePathsBase v0.9.21
  [1a297f60] FillArrays v1.12.0
  [64ca27bc] FindFirstFunctions v1.3.0
  [6a86dc24] FiniteDiff v2.24.0
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
  [f6369f11] ForwardDiff v0.10.36
  [b38be410] FreeType v4.1.1
  [663a7486] FreeTypeAbstraction v0.10.3
  [f62d2435] FunctionProperties v0.1.2
  [069b7b12] FunctionWrappers v1.1.3
  [77dc65aa] FunctionWrappersWrappers v0.1.3
  [de31a74c] FunctionalCollections v0.5.0
  [d9f16b24] Functors v0.4.12
  [f7f18e0c] GLFW v3.4.3
  [38e38edf] GLM v1.9.0
  [e9467ef8] GLMakie v0.10.7
  [0c68f7d7] GPUArrays v10.3.0
  [46192b85] GPUArraysCore v0.1.6
βŒ… [61eb1bfa] GPUCompiler v0.26.7
  [28b8d3ca] GR v0.73.7
  [d54b0c1a] GaussQuadrature v0.5.8
  [c145ed77] GenericSchur v0.5.4
  [cf35fbd7] GeoInterface v1.3.5
  [5c1252a2] GeometryBasics v0.4.11
  [d7ba0133] Git v1.3.1
  [c27321d9] Glob v1.3.1
  [a2bd30eb] Graphics v1.1.2
βŒƒ [86223c79] Graphs v1.9.0
  [3955a311] GridLayoutBase v0.11.0
  [42e2da0e] Grisu v1.0.2
  [c8ec2601] H5Zblosc v0.1.2
  [f67ccb44] HDF5 v0.17.2
  [cd3eb016] HTTP v1.10.8
  [9fb69e20] Hiccup v0.2.2
  [3e5b6fbb] HostCPUFeatures v0.1.17
  [1baab800] HybridArrays v0.4.16
  [34004b35] HypergeometricFunctions v0.3.24
  [47d2ed2b] Hyperscript v0.0.5
  [7073ff75] IJulia v1.25.0
  [b5f81e59] IOCapture v0.2.5
  [7869d1d1] IRTools v0.4.14
  [615f187c] IfElse v0.1.1
  [2803e5a7] ImageAxes v0.6.11
  [c817782e] ImageBase v0.1.7
  [a09fc81d] ImageCore v0.10.2
  [82e4d734] ImageIO v0.6.8
  [bc367c6b] ImageMetadata v0.9.9
  [313cdc1a] Indexing v1.1.1
  [9b13fd28] IndirectArrays v1.0.0
  [5903a43b] Infiltrator v1.8.3
  [d25df0c9] Inflate v0.1.5
  [22cec73e] InitialValues v0.3.1
  [842dd82b] InlineStrings v1.4.2
  [505f98c9] InplaceOps v0.3.0
  [a98d9a8b] Interpolations v0.15.1
  [d1acc4aa] IntervalArithmetic v0.22.14
  [8197267c] IntervalSets v0.7.10
  [3587e190] InverseFunctions v0.1.16
  [41ab1584] InvertedIndices v1.3.0
  [92d709cd] IrrationalConstants v0.2.2
  [f1662d9f] Isoband v0.1.1
  [c8e1da08] IterTools v1.10.0
  [42fd0dbc] IterativeSolvers v0.9.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [4138dd39] JLD v0.13.5
  [033835bb] JLD2 v0.4.51
  [1019f520] JLFzf v0.1.7
  [692b3bcd] JLLWrappers v1.5.0
  [97c1335a] JSExpr v0.5.4
  [682c06a0] JSON v0.21.4
  [0f8b85d8] JSON3 v1.14.0
  [b835a17e] JpegTurbo v0.1.5
  [98e50ef6] JuliaFormatter v1.0.59
  [aa1ae85d] JuliaInterpreter v0.9.34
  [ccbc3e58] JumpProcesses v9.13.3
  [ef3ab10e] KLU v0.6.0
  [63c18a36] KernelAbstractions v0.9.23
  [5ab0869b] KernelDensity v0.6.9
  [2c470bb0] Kronecker v0.5.5
  [ba0b0d4f] Krylov v0.9.6
βŒ… [0b1a1467] KrylovKit v0.6.1
  [5be7bae1] LBFGSB v0.4.1
  [929cbde3] LLVM v8.1.0
  [8b046642] LLVMLoopInfo v1.0.0
  [8ac3fa9e] LRUCache v1.6.1
  [b964fa9f] LaTeXStrings v1.3.1
  [2ee39098] LabelledArrays v1.16.0
  [984bce1d] LambertW v0.4.6
  [23fbe1c1] Latexify v0.16.5
  [10f19ff3] LayoutPointers v0.1.17
  [0e77f7df] LazilyInitializedFields v1.2.2
  [50d2b5c4] Lazy v0.15.1
βŒƒ [5078a376] LazyArrays v1.10.0
  [8cdb02fc] LazyModules v0.3.1
  [1fad7336] LazyStack v0.1.3
  [1d6d02ad] LeftChildRightSiblingTrees v0.2.0
  [2d8b4e74] LevyArea v1.0.0
  [6f1fad26] Libtask v0.8.7
  [d3d80556] LineSearches v7.3.0
  [7a12625a] LinearMaps v3.11.3
βŒƒ [7ed4a6bd] LinearSolve v2.30.1
  [4345ca2d] Loess v0.6.3
  [6fdf6af0] LogDensityProblems v2.1.1
  [996a588d] LogDensityProblemsAD v1.10.0
  [2ab3a3ac] LogExpFunctions v0.3.28
  [e6f89c97] LoggingExtras v1.0.3
  [bdcacae8] LoopVectorization v0.12.171
  [6f1432cf] LoweredCodeUtils v3.0.1
  [c7f686f2] MCMCChains v6.0.6
  [be115224] MCMCDiagnosticTools v0.3.10
  [e80e1ace] MLJModelInterface v1.11.0
  [d8e11817] MLStyle v0.4.17
  [3da0fdf6] MPIPreferences v0.1.11
  [1914dd2f] MacroTools v0.5.13
  [ee78f7c6] Makie v0.21.7
  [20f20a25] MakieCore v0.8.5
  [af67fdf4] ManifoldDiff v0.3.10
  [1cead3c2] Manifolds v0.9.20
  [3362f125] ManifoldsBase v0.15.13
  [d125e4d3] ManualMemory v0.1.8
  [dbb5928d] MappedArrays v0.4.2
  [d0879d2d] MarkdownAST v0.1.2
  [0a4f8689] MathTeXEngine v0.6.1
  [99c1a7ee] MatrixEquations v2.4.2
βŒ… [a3b82374] MatrixFactorizations v2.2.0
  [bb5d69b7] MaybeInplace v0.1.3
  [739be429] MbedTLS v1.1.9
  [442fdcdd] Measures v0.3.2
  [7269a6da] MeshIO v0.4.12
  [128add7d] MicroCollections v0.2.0
  [e1d29d7a] Missings v1.2.0
  [ff71e718] MixedModels v4.25.3
  [7e9fb7ac] MixedModelsDatasets v0.1.1
βŒ… [78c3b35d] Mocking v0.7.9
  [961ee093] ModelingToolkit v9.33.1
  [66fc600b] ModernGL v1.1.7
  [e94cdb99] MosaicViews v0.3.4
  [99f44e22] MsgPack v1.2.1
  [46d2c3a1] MuladdMacro v0.2.4
  [102ac46a] MultivariatePolynomials v0.5.6
  [6f286f6a] MultivariateStats v0.10.3
  [ffc61752] Mustache v1.0.20
  [d8a4904e] MutableArithmetics v1.4.6
  [a975b10e] Mux v1.0.2
  [d41bc354] NLSolversBase v7.8.3
  [76087f3c] NLopt v1.0.3
  [2774e3e8] NLsolve v4.5.1
  [872c559c] NNlib v0.9.22
  [5da4648a] NVTX v0.3.4
  [77ba4419] NaNMath v1.0.2
  [86f7a689] NamedArrays v0.10.3
  [356022a1] NamedDims v1.2.2
  [c020b1a1] NaturalSort v1.0.0
  [b8a86587] NearestNeighbors v0.4.18
  [f09324ee] Netpbm v1.1.1
  [067cfa3b] NonlinearEigenproblems v1.1.1
  [8913a72c] NonlinearSolve v3.14.0
  [d8793406] ObjectFile v0.4.2
  [510215fc] Observables v0.5.5
  [6fe1bfb0] OffsetArrays v1.14.1
  [52e1d378] OpenEXR v0.3.2
  [4d8831e6] OpenSSL v1.4.3
  [429524aa] Optim v1.9.4
  [3bd65402] Optimisers v0.3.3
  [7f7a1694] Optimization v3.27.0
  [bca83a33] OptimizationBase v1.5.0
  [36348300] OptimizationOptimJL v0.3.2
  [bac558e1] OrderedCollections v1.6.3
  [1dea7af3] OrdinaryDiffEq v6.87.0
  [90014a1f] PDMats v0.11.31
  [f57f5aa1] PNGFiles v0.4.3
  [65ce6f38] PackageExtensionCompat v1.0.2
  [19eb6ba3] Packing v0.5.0
  [5432bcbf] PaddedViews v0.5.12
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.1
  [fa939f87] Pidfile v1.3.0
  [b98c9c47] Pipe v1.3.0
  [14b8a8f1] PkgTemplates v0.7.51
  [eebad327] PkgVersion v0.3.3
  [ccf2f8ad] PlotThemes v3.2.0
  [995b91a9] PlotUtils v1.4.1
  [91a5bcdd] Plots v1.40.5
  [e409e4f3] PoissonRandom v0.4.4
  [f517fe37] Polyester v0.7.16
  [1d0040c9] PolyesterWeave v0.2.2
  [647866c9] PolygonOps v0.1.2
  [f27b6e38] Polynomials v4.0.11
  [2dfb63ee] PooledArrays v1.4.3
  [85a6dd25] PositiveFactorizations v0.2.4
  [d236fae5] PreallocationTools v0.4.24
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [8162dcfd] PrettyPrint v0.2.0
  [08abe8d2] PrettyTables v2.3.2
  [33c8b6b6] ProgressLogging v0.1.4
  [92933f4c] ProgressMeter v1.10.2
  [43287f4e] PtrArrays v1.2.0
  [438e738f] PyCall v1.96.4
  [4b34888f] QOI v1.0.0
  [1fd47b50] QuadGK v2.10.1
  [94ee1d12] Quaternions v0.7.6
  [df47a6cb] RData v1.0.0
  [74087812] Random123 v1.7.0
  [e6cf234a] RandomNumbers v1.6.0
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.4.5
  [c1ae055f] RealDot v0.1.0
  [3cdcf5f2] RecipesBase v1.3.4
  [01d81517] RecipesPipeline v0.6.12
  [731186ca] RecursiveArrayTools v3.27.0
  [f2c3362d] RecursiveFactorization v0.2.23
  [189a3867] Reexport v1.2.2
  [2792f1a3] RegistryInstances v0.1.0
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.0
  [ae5879a3] ResettableStacks v1.1.1
  [37e2e3b7] ReverseDiff v1.15.3
  [295af30f] Revise v3.5.18
  [79098fc4] Rmath v0.7.1
  [f2b01f46] Roots v2.1.6
  [5eaf0fd0] RoundingEmulator v0.2.1
  [7e49a35a] RuntimeGeneratedFunctions v0.5.13
  [fdea26ae] SIMD v3.5.0
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
βŒ… [26aad666] SSMProblems v0.1.1
  [0bca4576] SciMLBase v2.50.1
  [c0aeaf25] SciMLOperators v0.3.9
  [1ed8b502] SciMLSensitivity v7.65.0
  [53ae85a6] SciMLStructures v1.4.2
  [30f210dd] ScientificTypesBase v3.0.0
  [6c6a2e73] Scratch v1.2.1
  [91c51154] SentinelArrays v1.4.5
  [efcf1570] Setfield v1.1.1
  [65257c39] ShaderAbstractions v0.4.1
  [1277b4bf] ShiftedArrays v2.0.0
  [992d4aef] Showoff v1.0.3
  [73760f76] SignedDistanceFields v0.4.0
  [777ac1f9] SimpleBufferStream v1.1.0
  [727e6d20] SimpleNonlinearSolve v1.12.0
  [699a6c99] SimpleTraits v0.9.4
  [ce78b400] SimpleUnPack v1.1.0
  [47aef6b3] SimpleWeightedGraphs v1.4.0
  [45858cf5] Sixel v0.1.3
  [b85f4697] SoftGlobalScope v1.1.0
  [a2af1166] SortingAlgorithms v1.2.1
  [47a9eef4] SparseDiffTools v2.20.0
  [dc90abb0] SparseInverseSubset v0.1.2
  [0a514795] SparseMatrixColorings v0.4.0
  [e56a9233] Sparspak v0.3.9
  [276daf66] SpecialFunctions v2.4.0
  [03a91e81] SplitApplyCombine v1.2.3
  [171d559e] SplittablesBase v0.1.15
  [cae243ae] StackViews v0.1.1
  [aedffcd0] Static v1.1.1
  [0d7ed370] StaticArrayInterface v1.8.0
  [90137ffa] StaticArrays v1.9.7
  [1e83bf80] StaticArraysCore v1.4.3
  [64bff920] StatisticalTraits v3.4.0
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.3
  [4c63d2b9] StatsFuns v1.3.1
  [3eaba693] StatsModels v0.7.4
  [f3b207a7] StatsPlots v0.15.7
  [9672c7b4] SteadyStateDiffEq v2.3.0
  [789caeaf] StochasticDiffEq v6.68.0
  [7792a7ef] StrideArraysCore v0.5.7
  [5e0ebb24] Strided v2.1.1
  [4db3bf67] StridedViews v0.3.1
  [892a3eda] StringManipulation v0.3.4
  [09ab397b] StructArrays v0.6.18
  [53d494c1] StructIO v0.3.1
  [856f2bd8] StructTypes v1.10.0
  [c3572dad] Sundials v4.25.0
  [4297ee4d] SymbolicAnalysis v0.3.0
  [2efcf032] SymbolicIndexingInterface v0.3.28
  [19f23fe9] SymbolicLimits v0.2.2
  [d1185830] SymbolicUtils v3.2.0
  [0c5d862f] Symbolics v6.2.0
  [dc5dba14] TZJData v1.2.0+2024a
  [ab02a1b2] TableOperations v1.2.0
  [3783bdb8] TableTraits v1.0.1
  [40c74d1a] TableView v0.8.0
  [bd369af6] Tables v1.12.0
  [02d47bb6] TensorCast v0.4.8
  [62fd8b95] TensorCore v0.1.1
  [8ea1fca8] TermInterface v2.0.0
  [5d786b92] TerminalLoggers v0.1.7
  [b189fb0b] ThreadPools v2.1.1
  [8290d209] ThreadingUtilities v0.5.2
  [731e570b] TiffImages v0.10.0
  [9e3dc215] TimeSeries v0.24.2
  [f269a46b] TimeZones v1.18.0
  [a759f4b9] TimerOutputs v0.5.24
  [0796e94c] Tokenize v0.5.29
  [9f7883ad] Tracker v0.2.34
βŒ… [3bb67fe8] TranscodingStreams v0.10.10
  [28d57a85] Transducers v0.4.82
  [24ddb15e] TransmuteDims v0.1.16
  [d5829a12] TriangularSolve v0.2.1
  [410a4b4d] Tricks v0.1.9
  [981d1d27] TriplotBase v0.1.0
  [781d530d] TruncatedStacktraces v1.4.0
  [9d95972d] TupleTools v1.5.0
  [fce5fe82] Turing v0.33.3
  [0004c1f4] TuringGLM v2.11.0
  [9d95f2ec] TypedTables v1.4.6
  [5c2747f8] URIs v1.5.1
  [3a884ed6] UnPack v1.0.2
  [1cfade01] UnicodeFun v0.4.1
  [1986cc42] Unitful v1.21.0
  [45397f5d] UnitfulLatexify v1.6.4
  [a7c27f48] Unityper v0.1.6
  [013be700] UnsafeAtomics v0.2.1
  [d80eeb9a] UnsafeAtomicsLLVM v0.2.0
  [41fe7b60] Unzip v0.2.0
  [3d5dd08c] VectorizationBase v0.21.70
  [81def892] VersionParsing v1.3.0
  [19fa3120] VertexSafeGraphs v0.2.0
  [276b4fcb] WGLMakie v0.10.7
  [ea10d353] WeakRefStrings v1.4.2
  [0f1e0344] WebIO v0.8.21
  [104b5d7c] WebSockets v1.6.0
  [cc8bc4a8] Widgets v0.6.6
  [eead4739] WidgetsBase v0.1.4
  [efce3f68] WoodburyMatrices v1.0.0
  [76eceee3] WorkerUtilities v1.6.1
  [c2297ded] ZMQ v1.3.0
  [e88e6eb3] Zygote v0.6.70
  [700de1a5] ZygoteRules v0.2.5
βŒ… [68821587] Arpack_jll v3.5.1+1
  [0b7ba130] Blosc_jll v1.21.5+0
  [6e34b625] Bzip2_jll v1.0.8+1
  [4e9b3aee] CRlibm_jll v1.0.1+0
βŒ… [4ee394cb] CUDA_Driver_jll v0.9.2+0
βŒ… [76a88914] CUDA_Runtime_jll v0.14.1+0
  [83423d85] Cairo_jll v1.18.0+2
  [ee1fde0b] Dbus_jll v1.14.10+0
  [04572ae6] Deno_jll v1.33.4+0
  [5ae413db] EarCut_jll v2.2.4+0
  [7cc45869] Enzyme_jll v0.0.144+0
  [2702e6a9] EpollShim_jll v0.0.20230411+0
  [2e619515] Expat_jll v2.6.2+0
βŒ… [b22a6f82] FFMPEG_jll v4.4.4+1
  [f5851436] FFTW_jll v3.3.10+0
  [a3f928ae] Fontconfig_jll v2.13.96+0
  [d7e528f0] FreeType2_jll v2.13.2+0
  [559328eb] FriBidi_jll v1.0.14+0
  [0656b61e] GLFW_jll v3.4.0+1
  [d2c73de3] GR_jll v0.73.7+0
  [78b55507] Gettext_jll v0.21.0+0
  [f8c6e375] Git_jll v2.44.0+2
  [7746bdde] Glib_jll v2.80.2+0
  [3b182d85] Graphite2_jll v1.3.14+0
βŒƒ [0234f1f7] HDF5_jll v1.14.2+1
  [2e76f6c2] HarfBuzz_jll v2.8.1+1
  [e33a78d0] Hwloc_jll v2.11.1+0
  [905a6f67] Imath_jll v3.1.11+0
  [1d5cc7b8] IntelOpenMP_jll v2024.2.0+0
  [aacddb02] JpegTurbo_jll v3.0.3+0
  [9c1d0b0a] JuliaNVTXCallbacks_jll v0.2.1+0
  [c1c5ebd0] LAME_jll v3.100.2+0
βŒ… [88015f11] LERC_jll v3.0.0+1
βŒ… [dad2f222] LLVMExtra_jll v0.0.31+0
  [1d63c593] LLVMOpenMP_jll v17.0.6+0
  [dd4b983a] LZO_jll v2.10.2+0
  [81d17ec3] L_BFGS_B_jll v3.0.1+0
βŒ… [e9f186c6] Libffi_jll v3.2.2+1
  [d4300ac3] Libgcrypt_jll v1.8.11+0
  [7e76a0d4] Libglvnd_jll v1.6.0+0
  [7add5ba3] Libgpg_error_jll v1.49.0+0
  [94ce4f54] Libiconv_jll v1.17.0+0
  [4b2f31a3] Libmount_jll v2.40.1+0
βŒ… [89763e89] Libtiff_jll v4.5.1+1
  [38a345b3] Libuuid_jll v2.40.1+0
  [5ced341a] Lz4_jll v1.10.0+0
  [856f044c] MKL_jll v2024.2.0+0
  [7cb0a576] MPICH_jll v4.2.2+0
  [f1f71cc9] MPItrampoline_jll v5.4.0+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+2
  [079eb43e] NLopt_jll v2.8.0+0
  [e98f9f5b] NVTX_jll v3.1.0+2
  [e7412a2a] Ogg_jll v1.3.5+1
  [18a262bb] OpenEXR_jll v3.2.4+0
  [fe0851c0] OpenMPI_jll v5.0.5+0
  [458c3c95] OpenSSL_jll v3.0.14+0
  [efe28fd5] OpenSpecFun_jll v0.5.5+0
  [91d4177d] Opus_jll v1.3.2+0
  [36c8627f] Pango_jll v1.52.2+0
  [30392449] Pixman_jll v0.43.4+0
  [c0090381] Qt6Base_jll v6.7.1+1
  [629bc702] Qt6Declarative_jll v6.7.1+2
  [ce943373] Qt6ShaderTools_jll v6.7.1+1
  [e99dba38] Qt6Wayland_jll v6.7.1+1
βŒ… [f50d1b31] Rmath_jll v0.4.3+0
βŒ… [fb77eaff] Sundials_jll v5.2.2+0
  [a44049a8] Vulkan_Loader_jll v1.3.243+0
  [a2964d1f] Wayland_jll v1.21.0+1
  [2381bf8a] Wayland_protocols_jll v1.31.0+0
  [02c8fc9c] XML2_jll v2.13.1+0
  [aed1982a] XSLT_jll v1.1.41+0
  [ffd25f8a] XZ_jll v5.4.6+0
  [f67eecfb] Xorg_libICE_jll v1.1.1+0
  [c834827a] Xorg_libSM_jll v1.2.4+0
  [4f6342f7] Xorg_libX11_jll v1.8.6+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.11+0
  [935fb764] Xorg_libXcursor_jll v1.2.0+4
  [a3789734] Xorg_libXdmcp_jll v1.1.4+0
  [1082639a] Xorg_libXext_jll v1.3.6+0
  [d091e8ba] Xorg_libXfixes_jll v5.0.3+4
  [a51aa0fd] Xorg_libXi_jll v1.7.10+4
  [d1454406] Xorg_libXinerama_jll v1.1.4+4
  [ec84b674] Xorg_libXrandr_jll v1.5.2+4
  [ea2f1a96] Xorg_libXrender_jll v0.9.11+0
  [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.0+0
  [cc61e674] Xorg_libxkbfile_jll v1.1.2+0
  [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.4+0
  [12413925] Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] Xorg_xcb_util_jll v0.4.0+1
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] Xorg_xkbcomp_jll v1.4.6+0
  [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0
  [c5fb5394] Xorg_xtrans_jll v1.5.0+0
  [8f1865be] ZeroMQ_jll v4.3.5+0
  [3161d3a3] Zstd_jll v1.5.6+0
  [35ca27e7] eudev_jll v3.2.9+0
βŒ… [214eeab7] fzf_jll v0.43.0+0
  [1a1c6b14] gperf_jll v3.1.1+0
  [9a68df92] isoband_jll v0.2.3+0
  [477f73a3] libaec_jll v1.1.2+0
  [a4ae2306] libaom_jll v3.9.0+0
  [0ac62f75] libass_jll v0.15.1+0
  [1183f4f0] libdecor_jll v0.2.2+0
  [2db6ffa8] libevdev_jll v1.11.0+0
  [f638f0a6] libfdk_aac_jll v2.0.2+0
  [36db933b] libinput_jll v1.18.0+0
  [b53b4c65] libpng_jll v1.6.43+1
  [075b6546] libsixel_jll v1.10.3+0
  [a9144af2] libsodium_jll v1.0.20+0
  [f27f6e37] libvorbis_jll v1.3.7+2
  [009596ad] mtdev_jll v1.1.6+0
  [1317d2d5] oneTBB_jll v2021.12.0+0
  [1270edf5] x264_jll v2021.5.5+0
  [dfaa095f] x265_jll v3.5.0+0
  [d8fb68d0] xkbcommon_jll v1.4.1+1
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [8bf52ea8] CRC32c
  [ade2ca70] Dates
  [8ba89e20] Distributed
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [9fa8497b] Future
  [b77e0a4c] InteractiveUtils
  [4af54fe1] LazyArtifacts
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.10.0
  [de0858da] Printf
  [9abbd945] Profile
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays v1.10.0
  [10745b16] Statistics v1.10.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.4.0+0
  [e37daf67] LibGit2_jll v1.6.4+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.2+1
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [4536629a] OpenBLAS_jll v0.3.23+4
  [05823500] OpenLibm_jll v0.8.1+2
  [efcefdf7] PCRE2_jll v10.42.0+1
  [bea87d4a] SuiteSparse_jll v7.2.1+1
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.8.0+1
  [8e850ede] nghttp2_jll v1.52.0+1
  [3f19e933] p7zip_jll v17.4.0+2
Info Packages marked with βŒƒ and βŒ… have new versions available. Those with βŒƒ may be upgradable, but those with βŒ… are restricted by compatibility constraints from upgrading. To see why us
e `status --outdated -m`
Julia Version 1.10.4
Commit 48d4fd48430 (2024-06-04 10:41 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: 20 Γ— 13th Gen Intel(R) Core(TM) i7-13700H
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, goldmont)
Threads: 1 default, 0 interactive, 1 GC (on 20 virtual cores)
ChrisRackauckas commented 2 weeks ago

@DhairyaLGandhi are the examples here covered by the tests you've added?

DhairyaLGandhi commented 2 weeks ago

It seems like avoiding returning MTKParameters and instead returning the Tangent type might be better. I am not sure this is hitting the correct rules. I'll take a look

DhairyaLGandhi commented 2 weeks ago

I have a branch SciMLSensitivity#dg/nnrev2 which should take care of the Zygote issue. ReverseDiff does still feel like it needs a little more digging into.

julia> optfn = OptimizationFunction(loss, Optimization.AutoZygote());

julia> optprob = OptimizationProblem(
  optfn, rand(4), (odeprob, timesteps, data), lb=0.1zeros(4), ub=3ones(4));

julia> sol = solve(optprob, BFGS())
retcode: Success
u: 4-element Vector{Float64}:
 0.8990195546222982
 0.5906955967141667
 0.02737487567837998
 1.090967054832e-12