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SciML / NonlinearSolve.jl

High-performance and differentiation-enabled nonlinear solvers (Newton methods), bracketed rootfinding (bisection, Falsi), with sparsity and Newton-Krylov support.
https://docs.sciml.ai/NonlinearSolve/stable/
MIT License
221 stars 39 forks source link

Cannot work with Makie.jl on Apple silicon #316

Closed rinmyo closed 7 months ago

rinmyo commented 7 months ago

Describe the bug 🐞

Cannot work with Makie.jl on Apple silicon due to the version of FFTW conflict.

Expected behavior

Makie.jl works properly with NonlinearSolve.jl

Minimal Reproducible Example 👇

]activate --temp;
add NonlinearSolve;
add Makie;
up

Error & Stacktrace ⚠️

   Resolving package versions...
    Updating `/private/var/folders/x8/5w915z6n0tv2ccgv9v40z9500000gn/T/jl_eHWWNU/Project.toml`
  [ee78f7c6] + Makie v0.20.2
    Updating `/private/var/folders/x8/5w915z6n0tv2ccgv9v40z9500000gn/T/jl_eHWWNU/Manifest.toml`
⌅ [621f4979] + AbstractFFTs v0.5.0
  [398f06c4] + AbstractLattices v0.3.0
  [1520ce14] + AbstractTrees v0.4.4
  [27a7e980] + Animations v0.4.1
  [67c07d97] + Automa v1.0.2
  [13072b0f] + AxisAlgorithms v1.0.1
  [39de3d68] + AxisArrays v0.4.7
  [b99e7846] + BinaryProvider v0.5.10
⌅ [fa961155] + CEnum v0.4.2
  [96374032] + CRlibm v1.0.1
  [49dc2e85] + Calculus v0.5.1
  [d360d2e6] + ChainRulesCore v1.18.0
  [a2cac450] + ColorBrewer v0.4.0
  [35d6a980] + ColorSchemes v3.24.0
  [3da002f7] + ColorTypes v0.11.4
⌅ [c3611d14] + ColorVectorSpace v0.9.10
  [5ae59095] + Colors v0.12.10
  [861a8166] + Combinatorics v1.0.2
  [8f4d0f93] + Conda v1.10.0
  [d38c429a] + Contour v0.6.2
  [927a84f5] + DelaunayTriangulation v0.8.11
  [31c24e10] + Distributions v0.25.104
  [fa6b7ba4] + DualNumbers v0.6.8
  [90fa49ef] + ErrorfreeArithmetic v0.5.2
  [429591f6] + ExactPredicates v2.2.6
  [411431e0] + Extents v0.1.2
⌃ [7a1cc6ca] + FFTW v1.1.1
  [fa42c844] + FastRounding v0.3.1
  [5789e2e9] + FileIO v1.16.1
  [8fc22ac5] + FilePaths v0.8.3
  [48062228] + FilePathsBase v0.9.21
  [53c48c17] + FixedPointNumbers v0.8.4
  [59287772] + Formatting v0.4.2
  [b38be410] + FreeType v4.1.0
  [663a7486] + FreeTypeAbstraction v0.10.0
  [cf35fbd7] + GeoInterface v1.3.2
  [5c1252a2] + GeometryBasics v0.4.9
  [a2bd30eb] + Graphics v1.1.2
  [3955a311] + GridLayoutBase v0.10.0
  [42e2da0e] + Grisu v1.0.2
  [34004b35] + HypergeometricFunctions v0.3.23
  [2803e5a7] + ImageAxes v0.6.11
⌃ [c817782e] + ImageBase v0.1.5
⌅ [a09fc81d] + ImageCore v0.9.4
  [82e4d734] + ImageIO v0.6.7
  [bc367c6b] + ImageMetadata v0.9.9
  [9b13fd28] + IndirectArrays v1.0.0
⌅ [a98d9a8b] + Interpolations v0.14.7
  [d1acc4aa] + IntervalArithmetic v0.21.2
  [8197267c] + IntervalSets v0.7.8
  [f1662d9f] + Isoband v0.1.1
  [c8e1da08] + IterTools v1.8.0
  [682c06a0] + JSON v0.21.4
  [b835a17e] + JpegTurbo v0.1.4
  [5ab0869b] + KernelDensity v0.6.7
  [b964fa9f] + LaTeXStrings v1.3.1
  [8cdb02fc] + LazyModules v0.3.1
  [9c8b4983] + LightXML v0.9.1
  [9b3f67b0] + LinearAlgebraX v0.2.5
  [ee78f7c6] + Makie v0.20.2
  [20f20a25] + MakieCore v0.7.1
  [dbb5928d] + MappedArrays v0.4.2
  [0a4f8689] + MathTeXEngine v0.5.7
  [7475f97c] + Mods v2.2.0
  [e94cdb99] + MosaicViews v0.3.4
  [3b2b4ff1] + Multisets v0.4.4
  [f09324ee] + Netpbm v1.1.1
  [510215fc] + Observables v0.5.5
  [52e1d378] + OpenEXR v0.3.2
  [429524aa] + Optim v1.7.8
  [90014a1f] + PDMats v0.11.31
  [f57f5aa1] + PNGFiles v0.4.3
  [19eb6ba3] + Packing v0.5.0
  [5432bcbf] + PaddedViews v0.5.12
  [69de0a69] + Parsers v2.8.0
  [2ae35dd2] + Permutations v0.4.19
  [eebad327] + PkgVersion v0.3.3
  [995b91a9] + PlotUtils v1.3.5
  [647866c9] + PolygonOps v0.1.2
  [f27b6e38] + Polynomials v4.0.6
  [85a6dd25] + PositiveFactorizations v0.2.4
  [92933f4c] + ProgressMeter v1.9.0
  [4b34888f] + QOI v1.0.0
  [1fd47b50] + QuadGK v2.9.1
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [05181044] + RelocatableFolders v1.0.1
  [286e9d63] + RingLists v0.2.8
  [79098fc4] + Rmath v0.7.1
  [5eaf0fd0] + RoundingEmulator v0.2.1
  [6c6a2e73] + Scratch v1.2.1
  [3cc68bcd] + SetRounding v0.2.1
  [65257c39] + ShaderAbstractions v0.4.0
  [992d4aef] + Showoff v1.0.3
  [73760f76] + SignedDistanceFields v0.4.0
  [55797a34] + SimpleGraphs v0.8.6
  [ec83eff0] + SimplePartitions v0.3.1
  [cc47b68c] + SimplePolynomials v0.2.17
  [a6525b86] + SimpleRandom v0.3.1
  [45858cf5] + Sixel v0.1.3
  [c5dd0088] + StableHashTraits v1.1.2
  [cae243ae] + StackViews v0.1.1
  [4c63d2b9] + StatsFuns v1.3.0
  [09ab397b] + StructArrays v0.6.16
  [62fd8b95] + TensorCore v0.1.1
⌅ [731e570b] + TiffImages v0.6.8
  [3bb67fe8] + TranscodingStreams v0.10.2
  [981d1d27] + TriplotBase v0.1.0
  [9d95972d] + TupleTools v1.4.3
  [1cfade01] + UnicodeFun v0.4.1
  [81def892] + VersionParsing v1.3.0
  [efce3f68] + WoodburyMatrices v0.5.6
  [6e34b625] + Bzip2_jll v1.0.8+0
  [4e9b3aee] + CRlibm_jll v1.0.1+0
  [83423d85] + Cairo_jll v1.16.1+1
  [5ae413db] + EarCut_jll v2.2.4+0
  [2e619515] + Expat_jll v2.5.0+0
  [b22a6f82] + FFMPEG_jll v4.4.4+1
  [a3f928ae] + Fontconfig_jll v2.13.93+0
  [d7e528f0] + FreeType2_jll v2.13.1+0
  [559328eb] + FriBidi_jll v1.0.10+0
  [78b55507] + Gettext_jll v0.21.0+0
  [7746bdde] + Glib_jll v2.76.5+0
  [3b182d85] + Graphite2_jll v1.3.14+0
  [2e76f6c2] + HarfBuzz_jll v2.8.1+1
  [905a6f67] + Imath_jll v3.1.7+0
⌅ [aacddb02] + JpegTurbo_jll v2.1.91+0
  [c1c5ebd0] + LAME_jll v3.100.1+0
  [1d63c593] + LLVMOpenMP_jll v15.0.4+0
  [dd4b983a] + LZO_jll v2.10.1+0
⌅ [e9f186c6] + Libffi_jll v3.2.2+1
  [d4300ac3] + Libgcrypt_jll v1.8.7+0
  [7add5ba3] + Libgpg_error_jll v1.42.0+0
  [94ce4f54] + Libiconv_jll v1.17.0+0
  [4b2f31a3] + Libmount_jll v2.35.0+0
  [38a345b3] + Libuuid_jll v2.36.0+0
  [e7412a2a] + Ogg_jll v1.3.5+1
  [18a262bb] + OpenEXR_jll v3.1.4+0
  [458c3c95] + OpenSSL_jll v3.0.12+0
  [91d4177d] + Opus_jll v1.3.2+0
  [30392449] + Pixman_jll v0.42.2+0
  [f50d1b31] + Rmath_jll v0.4.0+0
  [02c8fc9c] + XML2_jll v2.12.2+0
  [aed1982a] + XSLT_jll v1.1.34+0
  [4f6342f7] + Xorg_libX11_jll v1.8.6+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.11+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.4+0
  [1082639a] + Xorg_libXext_jll v1.3.4+4
  [ea2f1a96] + Xorg_libXrender_jll v0.9.10+4
  [14d82f49] + Xorg_libpthread_stubs_jll v0.1.1+0
  [c7cfdc94] + Xorg_libxcb_jll v1.15.0+0
  [c5fb5394] + Xorg_xtrans_jll v1.5.0+0
  [9a68df92] + isoband_jll v0.2.3+0
  [a4ae2306] + libaom_jll v3.4.0+0
  [0ac62f75] + libass_jll v0.15.1+0
  [f638f0a6] + libfdk_aac_jll v2.0.2+0
  [b53b4c65] + libpng_jll v1.6.40+0
  [075b6546] + libsixel_jll v1.10.3+0
  [f27f6e37] + libvorbis_jll v1.3.7+1
  [1270edf5] + x264_jll v2021.5.5+0
  [dfaa095f] + x265_jll v3.5.0+0
  [8bf52ea8] + CRC32c
  [efcefdf7] + PCRE2_jll v10.42.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
Precompiling project...
  ✗ BinaryProvider
  ✗ FFTW
  ✗ KernelDensity
  ✗ Polynomials → PolynomialsFFTWExt
  ✗ Makie
  0 dependencies successfully precompiled in 7 seconds. 318 already precompiled.
  5 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages

Environment (please complete the following information):

Status `/private/var/folders/x8/5w915z6n0tv2ccgv9v40z9500000gn/T/jl_eHWWNU/Project.toml`
  [ee78f7c6] Makie v0.20.2
  [8913a72c] NonlinearSolve v3.0.1
Status `/private/var/folders/x8/5w915z6n0tv2ccgv9v40z9500000gn/T/jl_eHWWNU/Manifest.toml`
  [47edcb42] ADTypes v0.2.5
⌅ [621f4979] AbstractFFTs v0.5.0
  [398f06c4] AbstractLattices v0.3.0
  [1520ce14] AbstractTrees v0.4.4
  [7d9f7c33] Accessors v0.1.33
  [79e6a3ab] Adapt v3.7.2
  [27a7e980] Animations v0.4.1
  [ec485272] ArnoldiMethod v0.2.0
  [4fba245c] ArrayInterface v7.6.1
  [4c555306] ArrayLayouts v1.4.3
  [67c07d97] Automa v1.0.2
  [13072b0f] AxisAlgorithms v1.0.1
  [39de3d68] AxisArrays v0.4.7
  [b99e7846] BinaryProvider v0.5.10
  [62783981] BitTwiddlingConvenienceFunctions v0.1.5
⌅ [fa961155] CEnum v0.4.2
  [2a0fbf3d] CPUSummary v0.2.4
  [96374032] CRlibm v1.0.1
  [49dc2e85] Calculus v0.5.1
  [d360d2e6] ChainRulesCore v1.18.0
  [fb6a15b2] CloseOpenIntervals v0.1.12
  [a2cac450] ColorBrewer v0.4.0
  [35d6a980] ColorSchemes v3.24.0
  [3da002f7] ColorTypes v0.11.4
⌅ [c3611d14] ColorVectorSpace v0.9.10
  [5ae59095] Colors v0.12.10
  [861a8166] Combinatorics v1.0.2
  [38540f10] CommonSolve v0.2.4
  [bbf7d656] CommonSubexpressions v0.3.0
  [34da2185] Compat v4.10.1
  [a33af91c] CompositionsBase v0.1.2
  [2569d6c7] ConcreteStructs v0.2.3
  [8f4d0f93] Conda v1.10.0
  [187b0558] ConstructionBase v1.5.4
  [d38c429a] Contour v0.6.2
  [adafc99b] CpuId v0.3.1
  [9a962f9c] DataAPI v1.15.0
  [864edb3b] DataStructures v0.18.15
  [e2d170a0] DataValueInterfaces v1.0.0
  [927a84f5] DelaunayTriangulation v0.8.11
  [8bb1440f] DelimitedFiles v1.9.1
  [2b5f629d] DiffEqBase v6.142.0
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [31c24e10] Distributions v0.25.104
  [ffbed154] DocStringExtensions v0.9.3
  [fa6b7ba4] DualNumbers v0.6.8
  [4e289a0a] EnumX v1.0.4
  [f151be2c] EnzymeCore v0.6.4
  [90fa49ef] ErrorfreeArithmetic v0.5.2
  [429591f6] ExactPredicates v2.2.6
  [e2ba6199] ExprTools v0.1.10
  [411431e0] Extents v0.1.2
⌃ [7a1cc6ca] FFTW v1.1.1
  [7034ab61] FastBroadcast v0.2.8
  [29a986be] FastLapackInterface v2.0.0
  [fa42c844] FastRounding v0.3.1
  [5789e2e9] FileIO v1.16.1
  [8fc22ac5] FilePaths v0.8.3
  [48062228] FilePathsBase v0.9.21
  [1a297f60] FillArrays v1.9.2
  [6a86dc24] FiniteDiff v2.21.1
  [53c48c17] FixedPointNumbers v0.8.4
  [59287772] Formatting v0.4.2
  [f6369f11] ForwardDiff v0.10.36
  [b38be410] FreeType v4.1.0
  [663a7486] FreeTypeAbstraction v0.10.0
  [069b7b12] FunctionWrappers v1.1.3
  [77dc65aa] FunctionWrappersWrappers v0.1.3
  [46192b85] GPUArraysCore v0.1.5
  [cf35fbd7] GeoInterface v1.3.2
  [5c1252a2] GeometryBasics v0.4.9
  [a2bd30eb] Graphics v1.1.2
  [86223c79] Graphs v1.9.0
  [3955a311] GridLayoutBase v0.10.0
  [42e2da0e] Grisu v1.0.2
  [3e5b6fbb] HostCPUFeatures v0.1.16
  [34004b35] HypergeometricFunctions v0.3.23
  [615f187c] IfElse v0.1.1
  [2803e5a7] ImageAxes v0.6.11
⌃ [c817782e] ImageBase v0.1.5
⌅ [a09fc81d] ImageCore v0.9.4
  [82e4d734] ImageIO v0.6.7
  [bc367c6b] ImageMetadata v0.9.9
  [9b13fd28] IndirectArrays v1.0.0
  [d25df0c9] Inflate v0.1.4
  [18e54dd8] IntegerMathUtils v0.1.2
⌅ [a98d9a8b] Interpolations v0.14.7
  [d1acc4aa] IntervalArithmetic v0.21.2
  [8197267c] IntervalSets v0.7.8
  [3587e190] InverseFunctions v0.1.12
  [92d709cd] IrrationalConstants v0.2.2
  [f1662d9f] Isoband v0.1.1
  [c8e1da08] IterTools v1.8.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.5.0
  [682c06a0] JSON v0.21.4
  [b835a17e] JpegTurbo v0.1.4
  [ef3ab10e] KLU v0.4.1
  [5ab0869b] KernelDensity v0.6.7
  [ba0b0d4f] Krylov v0.9.5
  [b964fa9f] LaTeXStrings v1.3.1
  [73f95e8e] LatticeRules v0.0.1
  [10f19ff3] LayoutPointers v0.1.15
  [50d2b5c4] Lazy v0.15.1
  [5078a376] LazyArrays v1.8.2
  [8cdb02fc] LazyModules v0.3.1
  [9c8b4983] LightXML v0.9.1
  [d3d80556] LineSearches v7.2.0
  [9b3f67b0] LinearAlgebraX v0.2.5
  [7ed4a6bd] LinearSolve v2.20.2
  [2ab3a3ac] LogExpFunctions v0.3.26
  [bdcacae8] LoopVectorization v0.12.166
  [1914dd2f] MacroTools v0.5.11
  [ee78f7c6] Makie v0.20.2
  [20f20a25] MakieCore v0.7.1
  [d125e4d3] ManualMemory v0.1.8
  [dbb5928d] MappedArrays v0.4.2
  [0a4f8689] MathTeXEngine v0.5.7
  [a3b82374] MatrixFactorizations v2.1.0
  [bb5d69b7] MaybeInplace v0.1.1
  [e1d29d7a] Missings v1.1.0
  [7475f97c] Mods v2.2.0
  [e94cdb99] MosaicViews v0.3.4
  [46d2c3a1] MuladdMacro v0.2.4
  [3b2b4ff1] Multisets v0.4.4
  [d41bc354] NLSolversBase v7.8.3
  [77ba4419] NaNMath v1.0.2
  [f09324ee] Netpbm v1.1.1
  [8913a72c] NonlinearSolve v3.0.1
  [510215fc] Observables v0.5.5
  [6fe1bfb0] OffsetArrays v1.12.10
  [52e1d378] OpenEXR v0.3.2
  [429524aa] Optim v1.7.8
  [bac558e1] OrderedCollections v1.6.3
  [90014a1f] PDMats v0.11.31
  [f57f5aa1] PNGFiles v0.4.3
  [65ce6f38] PackageExtensionCompat v1.0.2
  [19eb6ba3] Packing v0.5.0
  [5432bcbf] PaddedViews v0.5.12
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.0
  [2ae35dd2] Permutations v0.4.19
  [eebad327] PkgVersion v0.3.3
  [995b91a9] PlotUtils v1.3.5
  [f517fe37] Polyester v0.7.9
  [1d0040c9] PolyesterWeave v0.2.1
  [647866c9] PolygonOps v0.1.2
  [f27b6e38] Polynomials v4.0.6
  [85a6dd25] PositiveFactorizations v0.2.4
  [d236fae5] PreallocationTools v0.4.12
  [aea7be01] PrecompileTools v1.2.0
  [21216c6a] Preferences v1.4.1
  [27ebfcd6] Primes v0.5.5
  [92933f4c] ProgressMeter v1.9.0
  [4b34888f] QOI v1.0.0
  [1fd47b50] QuadGK v2.9.1
  [8a4e6c94] QuasiMonteCarlo v0.3.3
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.4.5
  [3cdcf5f2] RecipesBase v1.3.4
  [731186ca] RecursiveArrayTools v2.38.10
  [f2c3362d] RecursiveFactorization v0.2.21
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.0
  [286e9d63] RingLists v0.2.8
  [79098fc4] Rmath v0.7.1
  [5eaf0fd0] RoundingEmulator v0.2.1
  [7e49a35a] RuntimeGeneratedFunctions v0.5.12
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.42
  [0bca4576] SciMLBase v2.9.1
  [c0aeaf25] SciMLOperators v0.3.7
  [6c6a2e73] Scratch v1.2.1
  [3cc68bcd] SetRounding v0.2.1
  [efcf1570] Setfield v1.1.1
  [65257c39] ShaderAbstractions v0.4.0
  [992d4aef] Showoff v1.0.3
  [73760f76] SignedDistanceFields v0.4.0
  [55797a34] SimpleGraphs v0.8.6
  [727e6d20] SimpleNonlinearSolve v1.0.2
  [ec83eff0] SimplePartitions v0.3.1
  [cc47b68c] SimplePolynomials v0.2.17
  [a6525b86] SimpleRandom v0.3.1
  [699a6c99] SimpleTraits v0.9.4
  [45858cf5] Sixel v0.1.3
  [ed01d8cd] Sobol v1.5.0
  [a2af1166] SortingAlgorithms v1.2.0
  [47a9eef4] SparseDiffTools v2.14.0
  [e56a9233] Sparspak v0.3.9
  [276daf66] SpecialFunctions v2.3.1
  [c5dd0088] StableHashTraits v1.1.2
  [cae243ae] StackViews v0.1.1
  [aedffcd0] Static v0.8.8
  [0d7ed370] StaticArrayInterface v1.4.1
  [90137ffa] StaticArrays v1.7.0
  [1e83bf80] StaticArraysCore v1.4.2
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.2
  [4c63d2b9] StatsFuns v1.3.0
  [7792a7ef] StrideArraysCore v0.5.2
  [09ab397b] StructArrays v0.6.16
  [2efcf032] SymbolicIndexingInterface v0.2.2
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.11.1
  [62fd8b95] TensorCore v0.1.1
  [8290d209] ThreadingUtilities v0.5.2
⌅ [731e570b] TiffImages v0.6.8
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Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m
Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: macOS (arm64-apple-darwin22.4.0)
  CPU: 10 × Apple M2 Pro
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-14.0.6 (ORCJIT, apple-m1)
  Threads: 6 on 6 virtual cores
Environment:
  JULIA_NUM_THREADS = auto

Additional context Makie depended on FFTW, but there is a condition that the version of FFTW is limited at 0.5.0 with current NonlinearSolve. but the BinaryProvider pkg that FFTW v0.5.0 depended does not support apple silicon. and the FFTW is no longer depending on the BinaryProvider now.

Add any other context about the problem here.

ChrisRackauckas commented 7 months ago

but there is a condition that the version of FFTW is limited at 0.5.0 with current NonlinearSolve

If you look at https://juliahub.com/ui/Packages/General/NonlinearSolve you see that NonlinearSolve does not directly or indirectly depend on FFTW/AbstractFFTs at all. The entire FFT stack is not part of the dependency list here. Are you sure this is being done in a clean environment?

rinmyo commented 7 months ago

yeah, of course, you can saw that I tried it on with a temp environment

ChrisRackauckas commented 7 months ago

It wasn't related to NonlinearSolve.jl but I fixed it anyways. If you did why AbstractFFTs it just shows a lot of Makie packages, no NonlinearSolve.jl. The issue was FFTW blocking MKL_jll v2024. Why that effects Makie? I have no idea because I don't develop it, but I make FFTW accept MKL_jll v2024 and it's fine now.

devmotion commented 7 months ago

Why that effects Makie? I have no idea

I assume the link is KernelDensity: https://github.com/JuliaStats/KernelDensity.jl/pull/117