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SciML / NonlinearSolve.jl

High-performance and differentiation-enabled nonlinear solvers (Newton methods), bracketed rootfinding (bisection, Falsi), with sparsity and Newton-Krylov support.
https://docs.sciml.ai/NonlinearSolve/stable/
MIT License
216 stars 39 forks source link

Error when installing NonlinearSolve.jl v3.4.0 in Julia v1.9.4 #402

Closed ranocha closed 2 months ago

ranocha commented 2 months ago

Describe the bug šŸž

NonlinearSolve.jl cannot be installed in Julia v1.9.4

Expected behavior

It can be installed and works.

Minimal Reproducible Example šŸ‘‡

julia> import Pkg; Pkg.activate(temp = true); Pkg.add(name = "NonlinearSolve", version = "3.4.0")
  Activating new project at `/var/folders/s0/gb3lfkrs7k34x8xk_36lxcmw0000gp/T/jl_papRnZ`
   Resolving package versions...
    Updating `/private/var/folders/s0/gb3lfkrs7k34x8xk_36lxcmw0000gp/T/jl_papRnZ/Project.toml`
āŒ… [8913a72c] + NonlinearSolve v3.4.0
    Updating `/private/var/folders/s0/gb3lfkrs7k34x8xk_36lxcmw0000gp/T/jl_papRnZ/Manifest.toml`
  [47edcb42] + ADTypes v0.2.7
āŒ… [79e6a3ab] + Adapt v3.7.2
  [ec485272] + ArnoldiMethod v0.4.0
āŒ… [4fba245c] + ArrayInterface v7.7.1
  [4c555306] + ArrayLayouts v1.9.1
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.5
  [2a0fbf3d] + CPUSummary v0.2.4
  [fb6a15b2] + CloseOpenIntervals v0.1.12
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.0
  [34da2185] + Compat v4.14.0
  [2569d6c7] + ConcreteStructs v0.2.3
  [187b0558] + ConstructionBase v1.5.5
  [adafc99b] + CpuId v0.3.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.18
  [e2d170a0] + DataValueInterfaces v1.0.0
āŒƒ [2b5f629d] + DiffEqBase v6.145.6
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [ffbed154] + DocStringExtensions v0.9.3
  [4e289a0a] + EnumX v1.0.4
āŒ… [f151be2c] + EnzymeCore v0.6.6
  [e2ba6199] + ExprTools v0.1.10
  [7034ab61] + FastBroadcast v0.2.8
  [9aa1b823] + FastClosures v0.3.2
  [29a986be] + FastLapackInterface v2.0.2
  [1a297f60] + FillArrays v1.10.0
āŒ… [6a86dc24] + FiniteDiff v2.22.0
  [f6369f11] + ForwardDiff v0.10.36
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.3
āŒƒ [46192b85] + GPUArraysCore v0.1.5
  [86223c79] + Graphs v1.10.0
  [3e5b6fbb] + HostCPUFeatures v0.1.16
  [615f187c] + IfElse v0.1.1
  [d25df0c9] + Inflate v0.1.4
  [92d709cd] + IrrationalConstants v0.2.2
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.5.0
āŒ… [ef3ab10e] + KLU v0.4.1
  [ba0b0d4f] + Krylov v0.9.5
  [10f19ff3] + LayoutPointers v0.1.15
  [50d2b5c4] + Lazy v0.15.1
  [5078a376] + LazyArrays v1.9.1
  [d3d80556] + LineSearches v7.2.0
āŒ… [7ed4a6bd] + LinearSolve v2.22.1
  [2ab3a3ac] + LogExpFunctions v0.3.27
  [bdcacae8] + LoopVectorization v0.12.169
  [1914dd2f] + MacroTools v0.5.13
  [d125e4d3] + ManualMemory v0.1.8
  [a3b82374] + MatrixFactorizations v2.1.1
  [bb5d69b7] + MaybeInplace v0.1.2
  [46d2c3a1] + MuladdMacro v0.2.4
  [d41bc354] + NLSolversBase v7.8.3
  [77ba4419] + NaNMath v1.0.2
āŒ… [8913a72c] + NonlinearSolve v3.4.0
  [6fe1bfb0] + OffsetArrays v1.13.0
  [bac558e1] + OrderedCollections v1.6.3
  [65ce6f38] + PackageExtensionCompat v1.0.2
  [d96e819e] + Parameters v0.12.3
  [f517fe37] + Polyester v0.7.12
  [1d0040c9] + PolyesterWeave v0.2.1
āŒ… [d236fae5] + PreallocationTools v0.4.13
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [3cdcf5f2] + RecipesBase v1.3.4
āŒ… [731186ca] + RecursiveArrayTools v3.3.3
  [f2c3362d] + RecursiveFactorization v0.2.21
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.0
  [7e49a35a] + RuntimeGeneratedFunctions v0.5.12
  [94e857df] + SIMDTypes v0.1.0
  [476501e8] + SLEEFPirates v0.6.42
āŒ… [0bca4576] + SciMLBase v2.15.2
āŒ… [c0aeaf25] + SciMLOperators v0.3.7
  [efcf1570] + Setfield v1.1.1
āŒ… [727e6d20] + SimpleNonlinearSolve v1.4.0
  [699a6c99] + SimpleTraits v0.9.4
  [47a9eef4] + SparseDiffTools v2.17.0
  [e56a9233] + Sparspak v0.3.9
  [276daf66] + SpecialFunctions v2.3.1
āŒ… [aedffcd0] + Static v0.8.9
  [0d7ed370] + StaticArrayInterface v1.5.0
  [90137ffa] + StaticArrays v1.9.3
  [1e83bf80] + StaticArraysCore v1.4.2
  [7792a7ef] + StrideArraysCore v0.5.2
āŒ… [2efcf032] + SymbolicIndexingInterface v0.3.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.11.1
  [8290d209] + ThreadingUtilities v0.5.2
āŒ… [d5829a12] + TriangularSolve v0.1.20
  [410a4b4d] + Tricks v0.1.8
  [781d530d] + TruncatedStacktraces v1.4.0
  [3a884ed6] + UnPack v1.0.2
  [3d5dd08c] + VectorizationBase v0.21.65
  [19fa3120] + VertexSafeGraphs v0.2.0
  [1d5cc7b8] + IntelOpenMP_jll v2024.0.2+0
  [856f044c] + MKL_jll v2024.0.0+0
  [efe28fd5] + OpenSpecFun_jll v0.5.5+0
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8ba89e20] + Distributed
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [9fa8497b] + Future
  [b77e0a4c] + InteractiveUtils
  [4af54fe1] + LazyArtifacts
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.9.2
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays
  [10745b16] + Statistics v1.9.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.0.5+0
  [deac9b47] + LibCURL_jll v8.4.0+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+0
  [14a3606d] + MozillaCACerts_jll v2022.10.11
  [4536629a] + OpenBLAS_jll v0.3.21+4
  [05823500] + OpenLibm_jll v0.8.1+0
  [bea87d4a] + SuiteSparse_jll v5.10.1+6
  [83775a58] + Zlib_jll v1.2.13+0
  [8e850b90] + libblastrampoline_jll v5.8.0+0
  [8e850ede] + nghttp2_jll v1.52.0+1
  [3f19e933] + p7zip_jll v17.4.0+0
        Info Packages marked with āŒƒ and āŒ… have new versions available. Those with āŒƒ may be upgradable, but those with āŒ… are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
Precompiling project...
  āœ— NonlinearSolve
  0 dependencies successfully precompiled in 6 seconds. 128 already precompiled.
  1 dependency errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the package

julia> using NonlinearSolve
[ Info: Precompiling NonlinearSolve [8913a72c-1f9b-4ce2-8d82-65094dcecaec]
WARNING: Method definition *(MatrixFactorizations.LayoutQ{T} where T, MatrixFactorizations.LayoutQ{T} where T) in module MatrixFactorizations at /Users/hendrik/.julia/packages/MatrixFactorizations/wSXzP/src/MatrixFactorizations.jl:124 overwritten at /Users/hendrik/.julia/packages/MatrixFactorizations/wSXzP/src/MatrixFactorizations.jl:70.
  ** incremental compilation may be fatally broken for this module **

ERROR: LoadError: UndefRefError: access to undefined reference
Stacktrace:
 [1] getindex
   @ ./essentials.jl:13 [inlined]
 [2] invalidation_leaves(invlist::Vector{Any})
   @ PrecompileTools ~/.julia/packages/PrecompileTools/L8A3n/src/invalidations.jl:42
 [3] recompile_invalidations(__module__::Module, expr::Any)
   @ PrecompileTools ~/.julia/packages/PrecompileTools/L8A3n/src/invalidations.jl:23
 [4] top-level scope
   @ ~/.julia/packages/NonlinearSolve/KlGj2/src/NonlinearSolve.jl:10
 [5] include
   @ ./Base.jl:457 [inlined]
 [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
   @ Base ./loading.jl:2049
 [7] top-level scope
   @ stdin:3
in expression starting at /Users/hendrik/.julia/packages/NonlinearSolve/KlGj2/src/NonlinearSolve.jl:1
in expression starting at stdin:3
ERROR: Failed to precompile NonlinearSolve [8913a72c-1f9b-4ce2-8d82-65094dcecaec] to "/Users/hendrik/.julia/compiled/v1.9/NonlinearSolve/jl_jR6BY3".
Stacktrace:
 [1] error(s::String)
   @ Base ./error.jl:35
 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
   @ Base ./loading.jl:2294
 [3] compilecache
   @ ./loading.jl:2167 [inlined]
 [4] _require(pkg::Base.PkgId, env::String)
   @ Base ./loading.jl:1805
 [5] _require_prelocked(uuidkey::Base.PkgId, env::String)
   @ Base ./loading.jl:1660
 [6] macro expansion
   @ ./loading.jl:1648 [inlined]
 [7] macro expansion
   @ ./lock.jl:267 [inlined]
 [8] require(into::Module, mod::Symbol)
   @ Base ./loading.jl:1611

julia> f(u, p) = u .* u .- 2.0
f (generic function with 1 method)

julia> u0 = (1.0, 2.0) # brackets
(1.0, 2.0)

julia> prob = IntervalNonlinearProblem(f, u0)
ERROR: UndefVarError: `IntervalNonlinearProblem` not defined
Stacktrace:
 [1] top-level scope
   @ REPL[5]:1

julia> sol = solve(prob)
ERROR: UndefVarError: `solve` not defined
Stacktrace:
 [1] top-level scope
   @ REPL[6]:1

Error & Stacktrace āš ļø

See above

Environment (please complete the following information):

julia> using Pkg; Pkg.status()
Status 
āŒ… [8913a72c] NonlinearSolve v3.4.0
Info Packages marked with āŒ… have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated`
julia> using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
Status 
  [47edcb42] ADTypes v0.2.7
āŒ… [79e6a3ab] Adapt v3.7.2
  [ec485272] ArnoldiMethod v0.4.0
āŒ… [4fba245c] ArrayInterface v7.7.1
  [4c555306] ArrayLayouts v1.9.1
  [62783981] BitTwiddlingConvenienceFunctions v0.1.5
  [2a0fbf3d] CPUSummary v0.2.4
  [fb6a15b2] CloseOpenIntervals v0.1.12
  [38540f10] CommonSolve v0.2.4
  [bbf7d656] CommonSubexpressions v0.3.0
  [34da2185] Compat v4.14.0
  [2569d6c7] ConcreteStructs v0.2.3
  [187b0558] ConstructionBase v1.5.5
  [adafc99b] CpuId v0.3.1
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.18
  [e2d170a0] DataValueInterfaces v1.0.0
āŒƒ [2b5f629d] DiffEqBase v6.145.6
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [ffbed154] DocStringExtensions v0.9.3
  [4e289a0a] EnumX v1.0.4
āŒ… [f151be2c] EnzymeCore v0.6.6
  [e2ba6199] ExprTools v0.1.10
  [7034ab61] FastBroadcast v0.2.8
  [9aa1b823] FastClosures v0.3.2
  [29a986be] FastLapackInterface v2.0.2
  [1a297f60] FillArrays v1.10.0
āŒ… [6a86dc24] FiniteDiff v2.22.0
  [f6369f11] ForwardDiff v0.10.36
  [069b7b12] FunctionWrappers v1.1.3
  [77dc65aa] FunctionWrappersWrappers v0.1.3
āŒƒ [46192b85] GPUArraysCore v0.1.5
  [86223c79] Graphs v1.10.0
  [3e5b6fbb] HostCPUFeatures v0.1.16
  [615f187c] IfElse v0.1.1
  [d25df0c9] Inflate v0.1.4
  [92d709cd] IrrationalConstants v0.2.2
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.5.0
āŒ… [ef3ab10e] KLU v0.4.1
  [ba0b0d4f] Krylov v0.9.5
  [10f19ff3] LayoutPointers v0.1.15
  [50d2b5c4] Lazy v0.15.1
  [5078a376] LazyArrays v1.9.1
  [d3d80556] LineSearches v7.2.0
āŒ… [7ed4a6bd] LinearSolve v2.22.1
  [2ab3a3ac] LogExpFunctions v0.3.27
  [bdcacae8] LoopVectorization v0.12.169
  [1914dd2f] MacroTools v0.5.13
  [d125e4d3] ManualMemory v0.1.8
  [a3b82374] MatrixFactorizations v2.1.1
  [bb5d69b7] MaybeInplace v0.1.2
  [46d2c3a1] MuladdMacro v0.2.4
  [d41bc354] NLSolversBase v7.8.3
  [77ba4419] NaNMath v1.0.2
āŒ… [8913a72c] NonlinearSolve v3.4.0
  [6fe1bfb0] OffsetArrays v1.13.0
  [bac558e1] OrderedCollections v1.6.3
  [65ce6f38] PackageExtensionCompat v1.0.2
  [d96e819e] Parameters v0.12.3
  [f517fe37] Polyester v0.7.12
  [1d0040c9] PolyesterWeave v0.2.1
āŒ… [d236fae5] PreallocationTools v0.4.13
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [3cdcf5f2] RecipesBase v1.3.4
āŒ… [731186ca] RecursiveArrayTools v3.3.3
  [f2c3362d] RecursiveFactorization v0.2.21
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.0
  [7e49a35a] RuntimeGeneratedFunctions v0.5.12
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.42
āŒ… [0bca4576] SciMLBase v2.15.2
āŒ… [c0aeaf25] SciMLOperators v0.3.7
  [efcf1570] Setfield v1.1.1
āŒ… [727e6d20] SimpleNonlinearSolve v1.4.0
  [699a6c99] SimpleTraits v0.9.4
  [47a9eef4] SparseDiffTools v2.17.0
  [e56a9233] Sparspak v0.3.9
  [276daf66] SpecialFunctions v2.3.1
āŒ… [aedffcd0] Static v0.8.9
  [0d7ed370] StaticArrayInterface v1.5.0
  [90137ffa] StaticArrays v1.9.3
  [1e83bf80] StaticArraysCore v1.4.2
  [7792a7ef] StrideArraysCore v0.5.2
āŒ… [2efcf032] SymbolicIndexingInterface v0.3.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.11.1
  [8290d209] ThreadingUtilities v0.5.2
āŒ… [d5829a12] TriangularSolve v0.1.20
  [410a4b4d] Tricks v0.1.8
  [781d530d] TruncatedStacktraces v1.4.0
  [3a884ed6] UnPack v1.0.2
  [3d5dd08c] VectorizationBase v0.21.65
  [19fa3120] VertexSafeGraphs v0.2.0
  [1d5cc7b8] IntelOpenMP_jll v2024.0.2+0
  [856f044c] MKL_jll v2024.0.0+0
  [efe28fd5] OpenSpecFun_jll v0.5.5+0
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8ba89e20] Distributed
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [9fa8497b] Future
  [b77e0a4c] InteractiveUtils
  [4af54fe1] LazyArtifacts
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.9.2
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays
  [10745b16] Statistics v1.9.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.0.5+0
  [deac9b47] LibCURL_jll v8.4.0+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.2+0
  [14a3606d] MozillaCACerts_jll v2022.10.11
  [4536629a] OpenBLAS_jll v0.3.21+4
  [05823500] OpenLibm_jll v0.8.1+0
  [bea87d4a] SuiteSparse_jll v5.10.1+6
  [83775a58] Zlib_jll v1.2.13+0
  [8e850b90] libblastrampoline_jll v5.8.0+0
  [8e850ede] nghttp2_jll v1.52.0+1
  [3f19e933] p7zip_jll v17.4.0+0
Info Packages marked with āŒƒ and āŒ… have new versions available. Those with āŒƒ may be upgradable, but those with āŒ… are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
julia> versioninfo()
Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
  Official https://julialang.org/ release

Additional context

I observed this in our CI runs, e.g., https://github.com/SKopecz/PositiveIntegrators.jl/actions/runs/8597851891/job/23557395790?pr=61#step:6:236

himanshugupta1009 commented 2 months ago

The same issue exists for Julia 1.9.3 as well.

avik-pal commented 2 months ago

The new release of https://github.com/JuliaLinearAlgebra/MatrixFactorizations.jl should fix this

ranocha commented 2 months ago

Thanks!