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SciML / OrdinaryDiffEq.jl

High performance ordinary differential equation (ODE) and differential-algebraic equation (DAE) solvers, including neural ordinary differential equations (neural ODEs) and scientific machine learning (SciML)
https://diffeq.sciml.ai/latest/
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Does not precompile on Mac OS 12.2, Intel Core i7, Julia 10.0.0 #2125

Closed alexeyovchinnikov closed 5 months ago

alexeyovchinnikov commented 5 months ago

PkgPrecompileError: The following 1 direct dependency failed to precompile:

OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed]

Failed to precompile OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] to "/Users/alexey/.julia/compiled/v1.10/OrdinaryDiffEq/jl_4fgKKV". [92305] signal (11.1): Segmentation fault: 11 in expression starting at /Users/alexey/.julia/packages/IrrationalConstants/vp5v4/src/stats.jl:3 unknown function (ip: 0x0) Allocations: 2906 (Pool: 2897; Big: 9); GC: 0 ERROR: LoadError: Failed to precompile IrrationalConstants [92d709cd-6900-40b7-9082-c6be49f344b6] to "/Users/alexey/.julia/compiled/v1.10/IrrationalConstants/jl_5SRZAI". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2462 [3] compilecache @ Base ./loading.jl:2334 [inlined] [4] (::Base.var"#968#969"{Base.PkgId})() @ Base ./loading.jl:1968 [5] mkpidlock(f::Base.var"#968#969"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ Base ./essentials.jl:889 [inlined] [9] invokelatest @ Base ./essentials.jl:884 [inlined] [10] maybe_cachefile_lock(f::Base.var"#968#969"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:2977 [11] maybe_cachefile_lock @ Base ./loading.jl:2974 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:1964 [13] require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1806 [14] #invoke_in_world#3 @ Base ./essentials.jl:921 [inlined] [15] invoke_in_world @ Base ./essentials.jl:918 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1797 [17] macro expansion @ Base ./loading.jl:1784 [inlined] [18] macro expansion @ Base ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1747 [20] #invoke_in_world#3 @ Base ./essentials.jl:921 [inlined] [21] invoke_in_world @ Base ./essentials.jl:918 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1740 [23] include @ Base ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2216 [25] top-level scope @ stdin:3 in expression starting at /Users/alexey/.julia/packages/DiffRules/rcnI0/src/DiffRules.jl:3 in expression starting at stdin:3 ERROR: LoadError: Failed to precompile DiffRules [b552c78f-8df3-52c6-915a-8e097449b14b] to "/Users/alexey/.julia/compiled/v1.10/DiffRules/jl_tBPJcq". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2462 [3] compilecache @ Base ./loading.jl:2334 [inlined] [4] (::Base.var"#968#969"{Base.PkgId})() @ Base ./loading.jl:1968 [5] mkpidlock(f::Base.var"#968#969"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ Base ./essentials.jl:889 [inlined] [9] invokelatest @ Base ./essentials.jl:884 [inlined] [10] maybe_cachefile_lock(f::Base.var"#968#969"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:2977 [11] maybe_cachefile_lock @ Base ./loading.jl:2974 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:1964 [13] require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1806 [14] #invoke_in_world#3 @ Base ./essentials.jl:921 [inlined] [15] invoke_in_world @ Base ./essentials.jl:918 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1797 [17] macro expansion @ Base ./loading.jl:1784 [inlined] [18] macro expansion @ Base ./lock.jl:267 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1747 [20] #invoke_in_world#3 @ Base ./essentials.jl:921 [inlined] [21] invoke_in_world @ Base ./essentials.jl:918 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1740 [23] include @ Base ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2216 [25] top-level scope @ stdin:3 in expression starting at /Users/alexey/.julia/packages/ForwardDiff/PcZ48/src/ForwardDiff.jl:1 in expression starting at stdin:3 ERROR: LoadError: Failed to precompile ForwardDiff [f6369f11-7733-5829-9624-2563aa707210] to "/Users/alexey/.julia/compiled/v1.10/ForwardDiff/jl_4HvtXl". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2462 [3] compilecache @ Base ./loading.jl:2334 [inlined] [4] (::Base.var"#968#969"{Base.PkgId})() @ Base ./loading.jl:1968 [5] mkpidlock(f::Base.var"#968#969"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ Base ./essentials.jl:889 [inlined] [9] invokelatest @ Base ./essentials.jl:884 [inlined] [10] maybe_cachefile_lock(f::Base.var"#968#969"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:2977 [11] maybe_cachefile_lock @ Base ./loading.jl:2974 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:1964 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1806 [14] #invoke_in_world#3 @ Base ./essentials.jl:921 [inlined] [15] invoke_in_world @ Base ./essentials.jl:918 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1797 [17] macro expansion @ Base ./loading.jl:1784 [inlined] [18] macro expansion @ Base ./lock.jl:267 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1747 [20] #invoke_in_world#3 @ Base ./essentials.jl:921 [inlined] [21] invoke_in_world @ Base ./essentials.jl:918 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1740 [23] top-level scope @ ~/.julia/packages/DiffEqBase/eLhx9/src/DiffEqBase.jl:34 [24] top-level scope @ ~/.julia/packages/DiffEqBase/eLhx9/src/DiffEqBase.jl:9 [25] include @ Base ./Base.jl:495 [inlined] [26] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2216 [27] top-level scope @ stdin:3 in expression starting at /Users/alexey/.julia/packages/DiffEqBase/eLhx9/src/DiffEqBase.jl:1 in expression starting at stdin:3 ERROR: LoadError: Failed to precompile DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] to "/Users/alexey/.julia/compiled/v1.10/DiffEqBase/jl_KCdRHv". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2462 [3] compilecache @ Base ./loading.jl:2334 [inlined] [4] (::Base.var"#968#969"{Base.PkgId})() @ Base ./loading.jl:1968 [5] mkpidlock(f::Base.var"#968#969"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.10.0+0.x64.apple.darwin14/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ Base ./essentials.jl:889 [inlined] [9] invokelatest @ Base ./essentials.jl:884 [inlined] [10] maybe_cachefile_lock(f::Base.var"#968#969"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:2977 [11] maybe_cachefile_lock @ Base ./loading.jl:2974 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:1964 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1806 [14] #invoke_in_world#3 @ Base ./essentials.jl:921 [inlined] [15] invoke_in_world @ Base ./essentials.jl:918 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1797 [17] macro expansion @ Base ./loading.jl:1784 [inlined] [18] macro expansion @ Base ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1747 [20] #invoke_in_world#3 @ Base ./essentials.jl:921 [inlined] [21] invoke_in_world @ Base ./essentials.jl:918 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1740 [23] include @ Base ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2216 [25] top-level scope @ stdin:3 in expression starting at /Users/alexey/.julia/packages/OrdinaryDiffEq/D4BiZ/src/OrdinaryDiffEq.jl:1 in expression starting at stdin:

=============================== ]st -m

returns this:

Status ~/.julia/environments/v1.10/Manifest.toml [47edcb42] ADTypes v0.2.6 ⌅ [79e6a3ab] Adapt v3.7.2 [ec485272] ArnoldiMethod v0.2.0 [4fba245c] ArrayInterface v7.7.0 [4c555306] ArrayLayouts v1.5.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.5 [2a0fbf3d] CPUSummary v0.2.4 [fb6a15b2] CloseOpenIntervals v0.1.12 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.0 [34da2185] Compat v4.12.0 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.4 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.16 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.146.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.3 [4e289a0a] EnumX v1.0.4 [f151be2c] EnzymeCore v0.6.5 [d4d017d3] ExponentialUtilities v1.25.0 [e2ba6199] ExprTools v0.1.10 [7034ab61] FastBroadcast v0.2.8 [9aa1b823] FastClosures v0.3.2 [29a986be] FastLapackInterface v2.0.1 [1a297f60] FillArrays v1.9.3 [6a86dc24] FiniteDiff v2.22.0 [f6369f11] ForwardDiff v0.10.36 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 ⌃ [46192b85] GPUArraysCore v0.1.5 [c145ed77] GenericSchur v0.5.3 [86223c79] Graphs v1.9.0 [3e5b6fbb] HostCPUFeatures v0.1.16 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.4 [92d709cd] IrrationalConstants v0.2.2 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.5.0 [ef3ab10e] KLU v0.4.1 [ba0b0d4f] Krylov v0.9.5 [10f19ff3] LayoutPointers v0.1.15 [50d2b5c4] Lazy v0.15.1 [5078a376] LazyArrays v1.8.3 [d3d80556] LineSearches v7.2.0 [7ed4a6bd] LinearSolve v2.22.1 [2ab3a3ac] LogExpFunctions v0.3.26 [bdcacae8] LoopVectorization v0.12.166 [1914dd2f] MacroTools v0.5.13 [d125e4d3] ManualMemory v0.1.8 [a3b82374] MatrixFactorizations v2.1.0 [bb5d69b7] MaybeInplace v0.1.1 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.8.3 [77ba4419] NaNMath v1.0.2 [8913a72c] NonlinearSolve v3.5.2 [6fe1bfb0] OffsetArrays v1.13.0 [bac558e1] OrderedCollections v1.6.3 [1dea7af3] OrdinaryDiffEq v6.70.0 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [f517fe37] Polyester v0.7.9 [1d0040c9] PolyesterWeave v0.2.1 [d236fae5] PreallocationTools v0.4.17 [aea7be01] PrecompileTools v1.2.0 [21216c6a] Preferences v1.4.1 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.7.0 [f2c3362d] RecursiveFactorization v0.2.21 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.12 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.42 [0bca4576] SciMLBase v2.22.0 [c0aeaf25] SciMLOperators v0.3.7 [efcf1570] Setfield v1.1.1 [727e6d20] SimpleNonlinearSolve v1.3.1 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [47a9eef4] SparseDiffTools v2.16.0 [e56a9233] Sparspak v0.3.9 [276daf66] SpecialFunctions v2.3.1 [aedffcd0] Static v0.8.8 [0d7ed370] StaticArrayInterface v1.5.0 [90137ffa] StaticArrays v1.9.2 [1e83bf80] StaticArraysCore v1.4.2 [7792a7ef] StrideArraysCore v0.5.2 [2efcf032] SymbolicIndexingInterface v0.3.5 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.11.1 [8290d209] ThreadingUtilities v0.5.2 [a759f4b9] TimerOutputs v0.5.23 [d5829a12] TriangularSolve v0.1.20 [410a4b4d] Tricks v0.1.8 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [3d5dd08c] VectorizationBase v0.21.65 [19fa3120] VertexSafeGraphs v0.2.0 [1d5cc7b8] IntelOpenMP_jll v2024.0.2+0 [856f044c] MKL_jll v2024.0.0+0 [efe28fd5] OpenSpecFun_jll v0.5.5+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.0.5+1 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+2 [05823500] OpenLibm_jll v0.8.1+2 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.8.0+1 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2

=================== ]st

returns this:

Status ~/.julia/environments/v1.10/Project.toml [1dea7af3] OrdinaryDiffEq v6.70.0

ChrisRackauckas commented 5 months ago

Isolated to upstream https://github.com/JuliaMath/IrrationalConstants.jl/issues/30